RNA id: TU139898


Basic Information

Item Value
RNA id TU139898
length 1528
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G121160
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20362223 ~ 20364183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTGTTTATTATTGTACCCACAACATTACTTACATTAGTCCCCAATGTGATAACATTTACAGACCATAGAGCATCAAACATTTGTGTATATTTCCACTTCTAGGAGTTCATAATGGttcaaaatatgtattttacagttgAGTGTTGATTTAGTGCTCACAACAATACTAAATTAATCCAACATTTTCCAGCTgtcaaaagtttaaaaaaaacaaattgcAATCAGCTTCCTCTTACCCCAATATGGATATAAGAAAAGGTGACTACCAAATGGTATAAGGGGCTGATATAAATCTAAGTGGCATAACTGAGTAGCTCACATTTCTCTCTTTAGAATCTGAATGTGGTCCAGTGGGCAGGTTGTTAGTACAGTAGTCGTTTAGCATTGTTAGCCAGACCGCTCAGTCCCAGATCAGATCAGCGATGTTTCCCAAAGCGGTTGAAGTGTCGATAGAGGAAGCGGATCCTCTTCTCCATGTCGTGTTTGTCCTGTGTCATCATCCTGTTCCCCACAATCTTCTTCCTCGTCAGACACTGCAGCTCGTTGCCACGGAAACCCTTCACACAGACCGGCCAGACGATCAGGTCCTTAGGGTGGGCTTTGAAGTCACCTACAGACAACACGTTGGAGATGTAAGGCCTgttattgcagtgtgtgtgtgttttggttaacccccaaaaaacatcacTGCACCATTTTGTATTTTCATATCTACCTGGTAACCAAGAGTAGATTTTAAGTTAGTCCAGAGGACAGCATCATGTTGCTGAAATGGTTTGAGTCCCAAGAGACTGGGCAGCACTTTCATAAAGATATTAAAGTTATGCATCAACTCAATGTCTTGACATCATGTCAAATGAGCTATGATTTGAAACTGATAACTTCCCAGTTACCCAAAATTCCTATGTTGTCATAAACCCCAAACATGCTCCTCTTCTCAGTCCACCTTCTTCAGCTCAGGAATGGCATTCATATGGACTGGACAGCACCTACCAGTGCTTAACTGTCTGGTTGTGTGGAGTGGCAAGCCTTCAGCAACCCTCTCAACAGAGACATAGCTTACCTGAAATACACAGAGGTCGTCAATCATTCTGGAAAGGtaaaatagctaacgttagctagctaactaaataagAAATTGTACAGCACACACAGCTACACGACCAACATATTGCTACAGCCTAGTAACATTACCTAGCTACTAgttttgtacaatatttgcaaaaACAAGAGGTAATGTTAGCTAGAATAAAATGCTGTTCCTCTTTGCCTACAAGTTGACCTAGCAAAGCTAGCTCAACAAGCTGGCGTAGCAAACAGGCAATACCGTGTTTCCCCGAAGCGTTGCACGTCTTTATGACCTTGTATTCGTCAATCTAATATGATAATAAAATCAAAGACAATCGAAATTCACGTTTTAAAGCTTCGACATGTATAAAGTCATGCGTGAAAAACGGGCACCTCCATGTTACTACGATTCCCAAGATGCAACGCGCATTTAACGTAGAACTCCTAAACATCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139891 lncRNA downstream 17493 20344495 ~ 20344730 (-) True G121153
TU139890 lncRNA downstream 41960 20319739 ~ 20320263 (-) True G121152
TU139888 lncRNA downstream 44373 20316640 ~ 20317850 (-) True LOC110509570
TU139773 lncRNA downstream 112924 20245018 ~ 20249299 (-) False G121044
TU139774 lncRNA downstream 112924 20245018 ~ 20249299 (-) True G121044
TU139910 lncRNA upstream 64420 20428603 ~ 20434075 (-) True G121167
TU139911 lncRNA upstream 64673 20428856 ~ 20434379 (-) True G121168
TU139917 lncRNA upstream 102969 20467152 ~ 20468133 (-) True G121174
TU139918 lncRNA upstream 104828 20469011 ~ 20470007 (-) True G121175
TU139919 lncRNA upstream 105925 20470108 ~ 20471953 (-) True G121176
NM_001195275.1 mRNA downstream 5225 20354114 ~ 20356998 (-) True lag-3
XM_021590531.2 mRNA downstream 44073 20312626 ~ 20318150 (-) False LOC110509570
XM_036941164.1 mRNA downstream 230342 20094421 ~ 20131881 (-) False LOC110537330
NM_001124554.1 mRNA upstream 7922 20372105 ~ 20377151 (-) True tapbpl
XM_036941286.1 mRNA upstream 27794 20391977 ~ 20399493 (-) True LOC110503568
XM_036941300.1 mRNA upstream 49316 20413499 ~ 20420922 (-) False LOC118936525
XM_036941302.1 mRNA upstream 51906 20416089 ~ 20420924 (-) True LOC118936525
XM_021581979.2 mRNA upstream 74612 20438795 ~ 20452556 (-) True LOC110503575
TU139782 other downstream 149856 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 433763 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 666659 19693689 ~ 19695564 (-) True LOC118944062
TU139386 other downstream 873991 19484337 ~ 19488232 (-) False cacng6b
TU139863 other upstream 98499 20462682 ~ 20465789 (-) True LOC110509624
TU139931 other upstream 134713 20498896 ~ 20500587 (-) True G121188
TU139978 other upstream 262374 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 692415 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 924433 21288616 ~ 21346687 (-) True G121533

Expression Profile