RNA id: TU139943


Basic Information

Item Value
RNA id TU139943
length 734
lncRNA type intronic
GC content 0.33
exon number 3
gene id G121197
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20532867 ~ 20549210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattatattcataaccagtaccataaccattatataccataaccagtaccataaccattatagtcaataaccagtaccataaccattatagtcataaccagtaccataaccattatattcaataaccagtaccatgaccattattgtcataaccagtaccataaccattacattcaataaccagtaccatgaccattatagtcataaccagtaccataaccattatagtcataaccagtaccataaccattatagtcataaccagtaccataaccattatagtcataaccagtaccataaccattatagtcaataaccagtaccatgaccattatagtcataaccagtaccataaccattacagtcataaccagtaccatgaccattatattcataaccagtaccataaccattatattcaataaccagtaccatgaccattatagtcataaccagtaccataaccattatattcaataaccagtaccataaccattatagtcataaccagtaccataaccattatattcaataaccagtaccataaccattatagtcataaccagtaccataaccagtaccataaccattatagtcaataaacagtaccataaccattatagtcaattaccagtaccatgaccattatagtcataaccagtaccataaccagtaccatgaccattatagtcataaccagtaccataaccattatattcaataaccagtaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139929 lncRNA downstream 6095 20491944 ~ 20528905 (-) True G121186
TU139936 lncRNA downstream 24243 20509386 ~ 20510757 (-) True G121192
TU139935 lncRNA downstream 25060 20509386 ~ 20509940 (-) False G121192
TU139919 lncRNA downstream 63047 20470108 ~ 20471953 (-) True G121176
TU139918 lncRNA downstream 64993 20469011 ~ 20470007 (-) True G121175
TU139962 lncRNA upstream 449 20542568 ~ 20543669 (-) True G121197
TU139973 lncRNA upstream 26481 20568600 ~ 20573951 (-) True G121203
TU139992 lncRNA upstream 43629 20585748 ~ 20628481 (-) True G121219
TU140011 lncRNA upstream 99636 20641755 ~ 20643822 (-) True G121238
TU140013 lncRNA upstream 110880 20652999 ~ 20653565 (-) True LOC110537462
XM_036941330.1 mRNA downstream 30131 20465981 ~ 20504869 (-) True LOC110509434
XM_021590389.2 mRNA downstream 30132 20465981 ~ 20504868 (-) False LOC110509434
XM_036941326.1 mRNA downstream 30132 20465981 ~ 20504868 (-) False LOC110509434
XM_036941336.1 mRNA downstream 30132 20465981 ~ 20504868 (-) False LOC110509434
XM_021590343.2 mRNA downstream 33235 20465981 ~ 20501765 (-) False LOC110509434
XM_036941394.1 mRNA upstream 54937 20597056 ~ 20602276 (-) False LOC110537423
XM_021623455.2 mRNA upstream 54937 20597056 ~ 20602488 (-) True LOC110537423
XM_036941433.1 mRNA upstream 109115 20651234 ~ 20654961 (-) False LOC110537462
XR_002475629.2 mRNA upstream 109115 20651234 ~ 20660987 (-) False LOC110537462
XM_036941430.1 mRNA upstream 111785 20653904 ~ 20654963 (-) False LOC110537462
TU139931 other downstream 34413 20498896 ~ 20500587 (-) True G121188
TU139863 other downstream 69211 20462682 ~ 20465789 (-) True LOC110509624
TU139782 other downstream 322633 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 606540 19924098 ~ 19928460 (-) True LOC110537275
TU139490 other downstream 839436 19693689 ~ 19695564 (-) True LOC118944062
TU139978 other upstream 84438 20626557 ~ 20627700 (-) True G121208
TU140219 other upstream 514479 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 746497 21288616 ~ 21346687 (-) True G121533
TU140595 other upstream 920574 21462693 ~ 21463030 (-) True G121738
TU140631 other upstream 948148 21490267 ~ 21547037 (-) False G121756

Expression Profile