RNA id: TU139035


Basic Information

Item Value
RNA id TU139035
length 2618
lncRNA type intronic
GC content 0.52
exon number 3
gene id G120450
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20831499 ~ 20838492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatcacaaagcagagtgtgctaggcagagagagagagagagggagatcacaaagcagagtgtgctaggcacagagagagagcgagagagagagagagggagatgacaaagcagagtgtgctaggcacagagagagagagagagagggagatgacaaagcagagtgtgctaggcacagagagagagagagagagggagatgacaaagcagagtgtgctaggcacagagagagagagagagagagggagatgacaaagcagagtgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagagagagggagagtacaaAGCAGAGTGttctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagaaagggagatcacaaagcagagtgtgctaggcagagagaaagggagagcacaaagcagagtgttctaggcagagagagagggacagggagagcacaaagcagagtgtgctaggcagagagagggagatcacaaagcagagtgtgctaggcagagagatagggagagggagatcacaaagcagactgctaggcagagagaaagggagagggagatcacaaagcagagagtgagggagagcacaaagcagagtgtgctaggctgagagagagggagagcacaaagcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggagagcacaaagcagagcgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagagagagggagggagagcacaaaGCAGAGCGTGCTaggcagagagtgagggagagggagagcacaaatcagagtgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggagatcacaaagcagattgtgctaggcagagagagagggagagcacaaaTCAGAGTGTgctatgcagagagagagggagatcacaaagcagagtgtgctaggcagagagtgagagagagggagagcacaaagcagagtgtgctaggcagagagtgagggagagggagagcacaaatcagagtgtgctaggcagagagagggggagatcacaaagcagagtgtgctagtcagagagagagggagagggagagcacaaagcagagtgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggatatcaCAAAGCAGAttgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagtgagggagagggagagcacaaatcagagtgtgctaggcagagagagagggagatcacaaagcagagtgtgctagtcagagagagagggagagggagagcacaaagcagagtgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggatatcaCAAAGCAGAttgtgctaggcagagagagagggagagcacaaagcagagtgtgctatgcagagagagagagagatcacaaaacagagtgtgctaggcagagagaaagggagagggagagcacaaaacagagtgtgctaggcagagagaaaggtagagggagagcacaaaacagagtgtgctaggcagagagatagggagagcacaaagcagagtgtgctaggcagagagaaagggagagcacAAAGCagtatgctaggcagagagagagggacagggagatcacaaagcagagtgtgctaggcagagagagagagagagagggagagcacaacgcagagtgtgctaggcagagagagagagagagatcacaaagCAGAgcgtgctaggcagagagatagggagagggagatcacaaagcagagtgtgctaggcagagagagagagagatcacaaagCAGAgcgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggagagtacaaagcagagtgtgctaggcagagagagagggacagggagatcacaaagcagagtgtgctaggcagagagagagagagggagagcacaacgcagagtgtgctaggcagagagagagagagagatcacaaagCAGAgcgtgctaggcagagagatagggagagggagatcacaaagcagagtgtgctaggcagagagagagagagatcacaaagCAGAgcgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagaaggggggaggttAAGGGTCAAGCAGCAATCCCTTGAATTGAGAGCCAATTACATTAATTGTAATCTAGATTTAAAGCAGACAGCTAcagctgtgacacacacacacactacacaccatgtGTAGACAGAGAGGAGCACTTAGGCAGACAGACAAAAGACAGGATGCATTCTGGTTCTGTAACCTGCGTTGTGTGGAtgcttgtgtgtgagagagggttgAGGTGTAAGTGTACTGTTTGTATa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139009 lncRNA upstream 35203 20791245 ~ 20796296 (+) True G120425
TU139002 lncRNA upstream 71753 20759358 ~ 20759746 (+) True G120418
TU138986 lncRNA upstream 95160 20735740 ~ 20736339 (+) True G120402
TU138932 lncRNA upstream 136072 20682327 ~ 20695427 (+) True LOC110537492
TU138910 lncRNA upstream 234626 20595713 ~ 20596873 (+) True wnt4b
TU138818 lncRNA downstream 16775 20855267 ~ 20858679 (+) True G120277
TU139051 lncRNA downstream 24995 20863487 ~ 20863881 (+) True G120462
TU139053 lncRNA downstream 28311 20866803 ~ 20867105 (+) True G120464
TU139054 lncRNA downstream 29081 20867573 ~ 20867824 (+) True G120465
TU139055 lncRNA downstream 29527 20868019 ~ 20868336 (+) True G120466
XM_036941462.1 mRNA upstream 136069 20679841 ~ 20695430 (+) False LOC110537492
XM_036941503.1 mRNA downstream 8823 20847315 ~ 20885076 (+) False pou2f2a
XM_036941508.1 mRNA downstream 8824 20847316 ~ 20885076 (+) True pou2f2a
XM_021623653.2 mRNA downstream 61712 20900204 ~ 20977481 (+) False erfl3
XM_021623645.2 mRNA downstream 61714 20900206 ~ 20977481 (+) False erfl3
XM_036941543.1 mRNA downstream 151639 20990131 ~ 21058856 (+) False LOC110509768
TU138671 other upstream 412371 20407862 ~ 20419128 (+) True G120169
TU138791 other upstream 511243 20319739 ~ 20320256 (+) True G120259
TU138741 other upstream 646874 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 660118 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 674389 20145733 ~ 20157110 (+) True zyx
TU139024 other downstream 61782 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 136359 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 153262 20991754 ~ 21015891 (+) True LOC110509768
TU140444 other downstream 703605 21542097 ~ 21547034 (+) True LOC118938333
TU140532 other downstream 746929 21585421 ~ 21586101 (+) True G121677

Expression Profile