RNA id: TU139053


Basic Information

Item Value
RNA id TU139053
length 303
lncRNA type intronic
GC content 0.42
exon number 1
gene id G120464
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20866803 ~ 20867105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTCATAAAAGGGAAGTtggtgtgagggagggagtgtgtcaGCAAAGACCAGTGTCTGTGTAGATATTGTGGGTTCTCACAAAATAAGCGGTAGTTAATACAGTAACTGCCAAATGAAACATCTGTTACGGTAACTTTCTTTAAAATAATTAACATAACGTAattaactttttattttatttacagtgAATTGTGTACCCctcacctctctatctctttaaatCTTTCTAGCTGCCCCAACCCACTCTCCCATTCCAccccctgttcctcctctctctttccctccctctcaccctccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139051 lncRNA upstream 2922 20863487 ~ 20863881 (+) True G120462
TU138813 lncRNA upstream 4439 20387473 ~ 20862364 (+) True G120275
TU138817 lncRNA upstream 8124 20385933 ~ 20858679 (+) False G120277
TU138818 lncRNA upstream 8124 20855267 ~ 20858679 (+) True G120277
TU139035 lncRNA upstream 28311 20831499 ~ 20838492 (+) True G120450
TU139054 lncRNA downstream 468 20867573 ~ 20867824 (+) True G120465
TU139055 lncRNA downstream 914 20868019 ~ 20868336 (+) True G120466
TU139057 lncRNA downstream 3860 20870965 ~ 20871219 (+) True G120468
TU139058 lncRNA downstream 7168 20874273 ~ 20874508 (+) True G120469
TU139060 lncRNA downstream 8298 20875403 ~ 20875839 (+) True G120471
XM_036941462.1 mRNA upstream 171373 20679841 ~ 20695430 (+) False LOC110537492
XM_021623653.2 mRNA downstream 33099 20900204 ~ 20977481 (+) False erfl3
XM_021623645.2 mRNA downstream 33101 20900206 ~ 20977481 (+) False erfl3
XM_036941543.1 mRNA downstream 123026 20990131 ~ 21058856 (+) False LOC110509768
XM_036941553.1 mRNA downstream 124505 20991610 ~ 21058856 (+) False LOC110509768
XM_036941535.1 mRNA downstream 124506 20991611 ~ 21058856 (+) False LOC110509768
TU138671 other upstream 447675 20407862 ~ 20419128 (+) True G120169
TU138791 other upstream 546547 20319739 ~ 20320256 (+) True G120259
TU138741 other upstream 682178 20179408 ~ 20184625 (+) False LOC110537348
TU138728 other upstream 695422 20171082 ~ 20171381 (+) True G120211
TU138669 other upstream 709693 20145733 ~ 20157110 (+) True zyx
TU139024 other downstream 33169 20900274 ~ 20973920 (+) False erfl3
TU139026 other downstream 107746 20974851 ~ 20976199 (+) True erfl3
TU139028 other downstream 124649 20991754 ~ 21015891 (+) True LOC110509768
TU140444 other downstream 674992 21542097 ~ 21547034 (+) True LOC118938333
TU140532 other downstream 718316 21585421 ~ 21586101 (+) True G121677

Expression Profile