RNA id: TU140093


Basic Information

Item Value
RNA id TU140093
length 236
lncRNA type intronic
GC content 0.41
exon number 1
gene id G121312
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20867293 ~ 20867528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTCAGCATGTTCAGGTTCAGTTGAAGCATTATACAGATAATCACATAGCAATAGAAAAAATGGAAGGTGCAAATGCTTTTGGTTGATGCTACGGCGCTGAAATATGATGTCACACTGCAGTATTGGCTTTTGTATATGCGGTGATATGTTTTGCTGTGCAGCCTCCGTTCATTCTTTCCTATATGTACAGAGGTGTTTGTTGGGTCTAACAATAGGCCCTACAGAGGTTTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140091 lncRNA downstream 3381 20863354 ~ 20863912 (-) True G121310
TU140067 lncRNA downstream 69239 20797394 ~ 20798054 (-) True G121286
TU139979 lncRNA downstream 171903 20694369 ~ 20695390 (-) True G121209
TU140013 lncRNA downstream 213728 20652999 ~ 20653565 (-) True LOC110537462
TU140011 lncRNA downstream 223471 20641755 ~ 20643822 (-) True G121238
TU140095 lncRNA upstream 3073 20870601 ~ 20870931 (-) True G121314
TU140096 lncRNA upstream 4612 20872140 ~ 20872704 (-) True G121315
TU140098 lncRNA upstream 20671 20888199 ~ 20890259 (-) True G121317
TU140164 lncRNA upstream 104199 20971727 ~ 20973710 (-) True G121372
TU140163 lncRNA upstream 106760 20974288 ~ 20974648 (-) True G121371
XM_036941455.1 mRNA downstream 178438 20673776 ~ 20688855 (-) True LOC110537483
XM_021623558.2 mRNA downstream 191261 20673776 ~ 20676032 (-) False LOC110537483
XM_021623547.2 mRNA downstream 194015 20668568 ~ 20673278 (-) True LOC110537475
XM_021623535.2 mRNA downstream 202074 20662992 ~ 20665219 (-) True LOC110537468
XM_036941430.1 mRNA downstream 212330 20653904 ~ 20654963 (-) False LOC110537462
XM_021590907.2 mRNA upstream 196539 21064067 ~ 21074205 (-) True LOC110509793
XM_021623668.2 mRNA upstream 454485 21322013 ~ 21348882 (-) False LOC110537544
XM_036941641.1 mRNA upstream 454485 21322013 ~ 21348882 (-) False LOC110537544
XM_036941651.1 mRNA upstream 454485 21322013 ~ 21348882 (-) False LOC110537544
XM_036941659.1 mRNA upstream 454485 21322013 ~ 21348882 (-) True LOC110537544
TU139978 other downstream 239593 20626557 ~ 20627700 (-) True G121208
TU139931 other downstream 366706 20498896 ~ 20500587 (-) True G121188
TU139863 other downstream 401504 20462682 ~ 20465789 (-) True LOC110509624
TU139782 other downstream 654926 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 938833 19924098 ~ 19928460 (-) True LOC110537275
TU140219 other upstream 189070 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 421088 21288616 ~ 21346687 (-) True G121533
TU140595 other upstream 595165 21462693 ~ 21463030 (-) True G121738
TU140631 other upstream 622739 21490267 ~ 21547037 (-) False G121756
TU141778 other upstream 928979 21796507 ~ 21812432 (-) True G122733

Expression Profile