RNA id: TU140096


Basic Information

Item Value
RNA id TU140096
length 565
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G121315
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20872140 ~ 20872704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAATCCAATAGGCATTCTAGTATTAGACAGTTGAAGAACCTGTTAATGGTTGTCAACAGTTGGCACTTATAAATAAATGAAATCTGTTTGTTGATAGTTGGAACATCTACAGCCCATCTTCAGGGCACTGTCCCAATAGAACAGAAACCGGTGGTAGTGACTAGTGCGAGGAGCCCACCTTGCTGCCCTTGGTGCTGTTGGAGGAGGAATTGAGGAGACTGCAGGTGGTGACCTGGCACCAGAACCAACTGCTGCAGCTGCAACAACTGCTGGATGtcctgcagggagacaggaggacagaacagagatcagagatggagagaacagaggggtcagagatggagagaacaaaggggtcagagatggagagaacagaggggtcagagatggagagaacagaggggtcagagatggagagaacagaggggtcagagatggagagaacagaggggtcagagatggagagaacagaggggtcagagatggagagaacaaaggggtcagagatggagagaacagaggggtcagagatggagagaacagaggggtcagagatggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140095 lncRNA downstream 1209 20870601 ~ 20870931 (-) True G121314
TU140093 lncRNA downstream 4612 20867293 ~ 20867528 (-) True G121312
TU140091 lncRNA downstream 8228 20863354 ~ 20863912 (-) True G121310
TU140067 lncRNA downstream 74086 20797394 ~ 20798054 (-) True G121286
TU139979 lncRNA downstream 176750 20694369 ~ 20695390 (-) True G121209
TU140098 lncRNA upstream 15495 20888199 ~ 20890259 (-) True G121317
TU140164 lncRNA upstream 99023 20971727 ~ 20973710 (-) True G121372
TU140163 lncRNA upstream 101584 20974288 ~ 20974648 (-) True G121371
TU140160 lncRNA upstream 103615 20976319 ~ 20980476 (-) True G121368
TU140166 lncRNA upstream 108168 20980872 ~ 20981205 (-) True G121374
XM_036941455.1 mRNA downstream 183285 20673776 ~ 20688855 (-) True LOC110537483
XM_021623558.2 mRNA downstream 196108 20673776 ~ 20676032 (-) False LOC110537483
XM_021623547.2 mRNA downstream 198862 20668568 ~ 20673278 (-) True LOC110537475
XM_021623535.2 mRNA downstream 206921 20662992 ~ 20665219 (-) True LOC110537468
XM_036941430.1 mRNA downstream 217177 20653904 ~ 20654963 (-) False LOC110537462
XM_021590907.2 mRNA upstream 191363 21064067 ~ 21074205 (-) True LOC110509793
XM_021623668.2 mRNA upstream 449309 21322013 ~ 21348882 (-) False LOC110537544
XM_036941641.1 mRNA upstream 449309 21322013 ~ 21348882 (-) False LOC110537544
XM_036941651.1 mRNA upstream 449309 21322013 ~ 21348882 (-) False LOC110537544
XM_036941659.1 mRNA upstream 449309 21322013 ~ 21348882 (-) True LOC110537544
TU139978 other downstream 244440 20626557 ~ 20627700 (-) True G121208
TU139931 other downstream 371553 20498896 ~ 20500587 (-) True G121188
TU139863 other downstream 406351 20462682 ~ 20465789 (-) True LOC110509624
TU139782 other downstream 659773 20211068 ~ 20212367 (-) True G121046
TU139615 other downstream 943680 19924098 ~ 19928460 (-) True LOC110537275
TU140219 other upstream 183894 21056598 ~ 21058849 (-) True G121421
TU140354 other upstream 415912 21288616 ~ 21346687 (-) True G121533
TU140595 other upstream 589989 21462693 ~ 21463030 (-) True G121738
TU140631 other upstream 617563 21490267 ~ 21547037 (-) False G121756
TU141778 other upstream 923803 21796507 ~ 21812432 (-) True G122733

Expression Profile