RNA id: TU140879


Basic Information

Item Value
RNA id TU140879
length 488
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G121962
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21858310 ~ 21858797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtttggaaattgctccaaaggatgaaccagacttgtggaagtctacaattactttttcctgaggtcttggctgatttattttcattttcccacgatgtcaagcaaagaggcactgagtttgaaggtagaccttgaaatacatccataggtacacctccaattgactcaaaggatgtcaattagcctatcagaagcttctaaagccatcattttctggacttttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgttaacaattgttggaaaaatgacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagaattttgtggagtggatgaaaaactagttttaatgactccaacctaagtgcatgtaaacttctgacttcaactgtaatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140833 lncRNA upstream 1890 21855962 ~ 21856420 (+) True G121929
TU140849 lncRNA upstream 7464 21849374 ~ 21850846 (+) False LOC110537720
TU140847 lncRNA upstream 7464 21849992 ~ 21850846 (+) False LOC110537720
TU140850 lncRNA upstream 7464 21849992 ~ 21850846 (+) True LOC110537720
TU140835 lncRNA upstream 46063 21798351 ~ 21812247 (+) False G121930
TU140905 lncRNA downstream 35465 21894262 ~ 21894505 (+) True G121986
TU140906 lncRNA downstream 35862 21894659 ~ 21894882 (+) True G121987
TU140908 lncRNA downstream 38069 21896866 ~ 21897069 (+) True G121989
TU140910 lncRNA downstream 40600 21899397 ~ 21899615 (+) True G121991
TU140950 lncRNA downstream 99530 21958327 ~ 21958741 (+) True G122022
XM_036941942.1 mRNA upstream 4607 21849271 ~ 21853703 (+) False LOC110537720
XM_036942175.1 mRNA downstream 44566 21903363 ~ 21966857 (+) False LOC118938391
XM_036942190.1 mRNA downstream 44568 21903365 ~ 21966857 (+) False LOC118938391
XM_036942207.1 mRNA downstream 44569 21903366 ~ 21966857 (+) False LOC118938391
XM_036942180.1 mRNA downstream 53884 21912681 ~ 21966857 (+) False LOC118938391
XM_036942199.1 mRNA downstream 53884 21912681 ~ 21966857 (+) False LOC118938391
TU140829 other upstream 33216 21821214 ~ 21825094 (+) True LOC110537735
TU140532 other upstream 272209 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 311276 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 842419 20991754 ~ 21015891 (+) True LOC110509768
TU139026 other upstream 882111 20974851 ~ 20976199 (+) True erfl3
TU140958 other downstream 157865 22016662 ~ 22018815 (+) False G122030
TU141079 other downstream 483730 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 483730 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 489786 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 951970 22810767 ~ 22811263 (+) True G122459

Expression Profile