RNA id: TU140905


Basic Information

Item Value
RNA id TU140905
length 244
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G121986
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21894262 ~ 21894505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgtatcaaatacttatgtcatgcaataaaatgcaaattaattacttaaaaatcatacaatgtgattttctggattttgttttagattccgtctctcacagttgaagtgtacctatgataaaaatgacagacctctacatgctttgtaagtaggaaaacctgcaaaatcttcagtgtatcaaatacttgttctccccactgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140879 lncRNA upstream 35465 21858310 ~ 21858797 (+) True G121962
TU140833 lncRNA upstream 37842 21855962 ~ 21856420 (+) True G121929
TU140849 lncRNA upstream 43416 21849374 ~ 21850846 (+) False LOC110537720
TU140847 lncRNA upstream 43416 21849992 ~ 21850846 (+) False LOC110537720
TU140850 lncRNA upstream 43416 21849992 ~ 21850846 (+) True LOC110537720
TU140906 lncRNA downstream 154 21894659 ~ 21894882 (+) True G121987
TU140908 lncRNA downstream 2361 21896866 ~ 21897069 (+) True G121989
TU140910 lncRNA downstream 4892 21899397 ~ 21899615 (+) True G121991
TU140950 lncRNA downstream 63822 21958327 ~ 21958741 (+) True G122022
TU140954 lncRNA downstream 92426 21986931 ~ 21987624 (+) True G122026
XM_036941942.1 mRNA upstream 40559 21849271 ~ 21853703 (+) False LOC110537720
XM_036942175.1 mRNA downstream 8858 21903363 ~ 21966857 (+) False LOC118938391
XM_036942190.1 mRNA downstream 8860 21903365 ~ 21966857 (+) False LOC118938391
XM_036942207.1 mRNA downstream 8861 21903366 ~ 21966857 (+) False LOC118938391
XM_036942180.1 mRNA downstream 18176 21912681 ~ 21966857 (+) False LOC118938391
XM_036942199.1 mRNA downstream 18176 21912681 ~ 21966857 (+) False LOC118938391
TU140829 other upstream 69168 21821214 ~ 21825094 (+) True LOC110537735
TU140532 other upstream 308161 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 347228 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 878371 20991754 ~ 21015891 (+) True LOC110509768
TU139026 other upstream 918063 20974851 ~ 20976199 (+) True erfl3
TU140958 other downstream 122157 22016662 ~ 22018815 (+) False G122030
TU141079 other downstream 448022 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 448022 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 454078 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 916262 22810767 ~ 22811263 (+) True G122459

Expression Profile