RNA id: TU140910


Basic Information

Item Value
RNA id TU140910
length 219
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G121991
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21899397 ~ 21899615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttccctTTACCTTAACCCTCCACCTATTCCTATAGCCAACGCTAcccccacaaacacacaataGCACACACTCTGATAAGTGGTGTGTGTTTACAGCTTGTTCATTTCCACTCTGCAACTCTCAGCTGAGAAAAGAGTgcgggagagagagcaggaaagagagagggatagagaaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140908 lncRNA upstream 2328 21896866 ~ 21897069 (+) True G121989
TU140906 lncRNA upstream 4515 21894659 ~ 21894882 (+) True G121987
TU140905 lncRNA upstream 4892 21894262 ~ 21894505 (+) True G121986
TU140879 lncRNA upstream 40600 21858310 ~ 21858797 (+) True G121962
TU140833 lncRNA upstream 42977 21855962 ~ 21856420 (+) True G121929
TU140950 lncRNA downstream 58712 21958327 ~ 21958741 (+) True G122022
TU140954 lncRNA downstream 87316 21986931 ~ 21987624 (+) True G122026
TU140961 lncRNA downstream 115515 22015130 ~ 22018815 (+) False G122030
TU140959 lncRNA downstream 116790 22016405 ~ 22018815 (+) False G122030
TU140962 lncRNA downstream 117346 22016961 ~ 22018815 (+) True G122030
XM_036941942.1 mRNA upstream 45694 21849271 ~ 21853703 (+) False LOC110537720
XM_036942175.1 mRNA downstream 3748 21903363 ~ 21966857 (+) False LOC118938391
XM_036942190.1 mRNA downstream 3750 21903365 ~ 21966857 (+) False LOC118938391
XM_036942207.1 mRNA downstream 3751 21903366 ~ 21966857 (+) False LOC118938391
XM_036942180.1 mRNA downstream 13066 21912681 ~ 21966857 (+) False LOC118938391
XM_036942199.1 mRNA downstream 13066 21912681 ~ 21966857 (+) False LOC118938391
TU140829 other upstream 74303 21821214 ~ 21825094 (+) True LOC110537735
TU140532 other upstream 313296 21585421 ~ 21586101 (+) True G121677
TU140444 other upstream 352363 21542097 ~ 21547034 (+) True LOC118938333
TU139028 other upstream 883506 20991754 ~ 21015891 (+) True LOC110509768
TU139026 other upstream 923198 20974851 ~ 20976199 (+) True erfl3
TU140958 other downstream 117047 22016662 ~ 22018815 (+) False G122030
TU141079 other downstream 442912 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other downstream 442912 22342527 ~ 22346505 (+) True LOC110537939
TU141081 other downstream 448968 22348583 ~ 22349936 (+) True apoc4
TU141439 other downstream 911152 22810767 ~ 22811263 (+) True G122459

Expression Profile