RNA id: TU141887


Basic Information

Item Value
RNA id TU141887
length 1399
RNA type TUCP
GC content 0.38
exon number 2
gene id G122829
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22026299 ~ 22027717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGGAAGGTGCCGTGGGTGTATACAGAGGGCCGCAGGGCGCTGTGGTTGAGGAAACACTGGTACAACCCTGTGTCGTTCAGACGGACCTCCCTCAGGATGAGTGTGTGACACATGACCCCTGCTGCCGTCAGGTTCCCCCCATCCACCGTCACACGGTTGTCTCTCCAGTCCACTCCCCGAAGGATGCCTTTGACCATGTGGGGGCTGGTGGCCCAGGTGGTGTCCACGGCTCCCCCTGTGACTGAGTAGCAGCAGCGCAGGGAGGCGGTGTGAGAGAGCTGCACCCTCTGAGAGGGCCTGTCTGGCTCCAGAGTAACCTGGATACGGCTGAGGTCACCTGCTAGAAGGCAGAGCAGCAGGAGTAGGATGAGGTTGACCCATAACACACTGATCAAAGGTCAGTTATTGACAGCATATCTatataattttgcacgtccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgttattccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaagttgcaaagttcaagggggccgaatactttcgcaaggcactgtataagtgtAGGGTAAGTGTAGGGTATGGTTTCTAGTGtgtgatgattgtggactacaggaagaggaggaccgAGCGCGactccattctcatcgatggggctgtagtagagcaagttgagagcttcaagttccttggtgtccacatcaccaacattgtccaagcacaccaagatagtcgtgatgagggcacgacaaaactgaaaagatttggcatgggtcctcagatcctcaaaaggttctacagctgcaccatcaagagcatcttgactggttgcatcactgcctggtatggcaactgctcagcctccgaccgcaaggcactacagagtagaggtcgaccaattaattggaatggctaattaattagggccgatttcaatcggaaatctgtatttttgggcgccgatttgctgtttttttttttttttttttacacctttacttaatctttatttaacttggcaagtcagttaagagcacattcttattttcaatgacggcgtaCAAACGGTGGGTTATCTGCCTcattcaagggcagaacgacagattttcacctcgtcagctcgggggatccaatcttgcaaccttacagttaactagtccaacgcaataacgacctgcttCTCTCtagttgcactccacaaggagactgcctgttacgcaaatgcagtaagccaaggtaagttgctagctagcattacatttatcttagaaaaaacaataaatcataatcactagttaactacacatggttaatgatattactag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141916 lncRNA downstream 11012 22014720 ~ 22015287 (-) True G122849
TU141889 lncRNA downstream 11797 22012926 ~ 22014502 (-) True G122830
TU141888 lncRNA downstream 12743 22011964 ~ 22013556 (-) False G122830
TU141909 lncRNA downstream 32795 21989901 ~ 21993504 (-) True G122844
TU141853 lncRNA downstream 131838 21894131 ~ 21894461 (-) True G122795
TU141927 lncRNA upstream 23706 22051423 ~ 22056137 (-) True G122860
TU141988 lncRNA upstream 75451 22103168 ~ 22104400 (-) True G122909
TU141946 lncRNA upstream 86983 22114700 ~ 22117358 (-) False LOC110537847
TU141951 lncRNA upstream 86983 22114700 ~ 22117941 (-) True LOC110537847
TU142006 lncRNA upstream 94057 22121774 ~ 22122035 (-) False LOC110537842
XM_036941837.1 mRNA downstream 304664 21713005 ~ 21721635 (-) False LOC110537643
XM_036941829.1 mRNA downstream 304664 21713006 ~ 21721635 (-) True LOC110537643
XM_021623793.2 mRNA downstream 378813 21645294 ~ 21647486 (-) True cnfn
LOC110534450 mRNA downstream 392654 21631390 ~ 21633645 (-) True LOC110534450
XM_036961756.1 mRNA downstream 429764 21595236 ~ 21596535 (-) True LOC118944069
XM_021624276.2 mRNA upstream 87932 22115649 ~ 22117961 (-) False LOC110537847
XM_021624284.2 mRNA upstream 88122 22115839 ~ 22118083 (-) False LOC110537847
LOC110537842 mRNA upstream 92862 22120579 ~ 22127548 (-) False LOC110537842
XR_005035698.1 mRNA upstream 144975 22172692 ~ 22175353 (-) False LOC110537803
XM_036942258.1 mRNA upstream 145187 22172904 ~ 22175353 (-) True LOC110537803
TU141817 other downstream 170398 21851433 ~ 21855901 (-) False G122761
TU141778 other downstream 213867 21796507 ~ 21812432 (-) True G122733
TU140631 other downstream 479262 21490267 ~ 21547037 (-) False G121756
TU140595 other downstream 563269 21462693 ~ 21463030 (-) True G121738
TU140354 other downstream 679612 21288616 ~ 21346687 (-) True G121533
TU142002 other upstream 92863 22120580 ~ 22157534 (-) False LOC110537842
TU141995 other upstream 101897 22129614 ~ 22155729 (-) False LOC110537842
TU141996 other upstream 101897 22129614 ~ 22157534 (-) False LOC110537842
TU141994 other upstream 121800 22149517 ~ 22155729 (-) True LOC110537842
TU142062 other upstream 348436 22376153 ~ 22378160 (-) True G122972

Expression Profile