RNA id: TU141927


Basic Information

Item Value
RNA id TU141927
length 4685
lncRNA type intronic
GC content 0.44
exon number 2
gene id G122860
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22051423 ~ 22056137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCGGTCACATCCTTTATAAACAagaggtgtagactaacagtgaaattcttacttgtGTGTGCTGTATGGAAAAAGTGTTTCTGTACTCATAAGTGTCCATATATCCATGACCTATGAAATGTTGGAATCCTTCTAGACTGTAATGTCATTTGGGGATTAAGAAAgaatttaaaatgtgtgtgtgtgggttaatGGGCAATGTAAGTAAGTCTTcctttaacctctcttgggtagggggcagtattttcacctccggatgaaaagcgtgcccaaagtaaactgcctgttcctCAGgcacagaagctaggatatgcatattattggtagatgtggatagaagacactaaagtttcaaaaactgttaaaataatgtctgagtataacagaactgatatggcaggtgaaaacctgagaaaaatccattcaggaagtggAATTATTTTCATGTAGCTGTTTTTCAACTCAATGCCTATAGAGAATCCAATGGGTTAGGAATCagattgacatctagtggaagccataggaactccagtctttagacatggtttcaggcttttattttgagaAACGACGAGTAAACAGCCCTTTTGGTCagaggacagaggaactctgcagaCCTGATTCGGCGAGCTCCGTTTGttatttttcctttctattgaaaacggtattgtccggttgaaatattattgattataaagacaaacaacctgaggattaattataatcatcgtttgacatgttttgacAAACTTTACCGGTACTTTTAGTATGTATTCGTCTGCCTGCTGTGACTGCCTTGGAGccattggattactgaacaaaacgcaccaacaaaactgagtttttgggacataaagagggactttatcgaacatttactgtgtaactgggagtcttgtgagtgcaaccatatgaagatcaaaggtaagtgttGTATAGCACACTATTACTTAtacctaacataaggacaggaCATGAAACGGGAGTAGAAATTAGCGTGGACATTGGGGGGGTTACAGGGTGCCCTAAAGGGACAAAACTAGAATATCAATACACAACATATTCCTCCCCCTTTTACCTTTGATGACTCATAAGGAAAAAGTAAATATTCACTGTTTTGCCTATTGTTTTCTTTTTAATATAAGTTCTCTTTATGCAAGTAAATGAACTTTTCAGAATAACCTCTTCTAAACTAGGGATAGAGGGTAGACTGCCTCAGTCCCCAGACCTGGGGTGTATTCTGCCCCAATGTCAGTGGTTAGTCTGAACTAAATAGTCAACCTGTCAGGGTGTTGTCTTTCTCTTGCAGGGTAATGACGACGTACAGGTGAGTCTACAGTCACATTATCGCTGAGTCGGAGTGGTGATGGTGTATGCCCAGACTGGGGTGAAACAGTACCCTGAGTAGGCACTCTGACTGGTTCAGAGTCTGGAGCACTTTCCACATTCGTAGGTTGCTGCAGAGGATGTTCAGGTGATAGCTCATAGTTGTGGTAGGTCTCCAGTAGCTGATCTTAGTTTGTCATTTGACAGGAGTCATCTGAGGTTGGTTCCTTGCAAAAGTTGATCCGCTTGTCTTCTCCATATGATGTTCTCCGGTGTGTGAAATGTGTAGGACACAGGCCCTGTTTGTGCAACCACTGTGGCTGGTATCCACTTTGGAGCTTTGCAGTAGTTCCGAGCAAGAACTCGCTCTCCAGCTATGAAGCTTCTGTGTTTTGCTTTGCTCTGTCTCTCCACCTGTGCTCGCTGTTGTGTCTGTACAAACGGTCTCGTCTTTGGAGGTCTCAGGAGGTCGAGTCGCGTGTGAAGCCGTCTTTTCATCACGGCTGACGCGGGGGCCACTTTGGTTGTAGCATGGGGAGTGTTTCTGTAAGTTAACAGGAGGTGTTTAGACACCTATTGAGGGAGCTGGCAAGCCGAAGCGACTGAAGATTGACCGTAGCTCTTCGATGGTTCTTTCAGCTGAGGTGCTCTTCATCACTGTGACCTCAGGCCATTTGCATCAACTACGACTAAGAACATACGATCTTCCAGTGGGCCTGCATAGTCTGTGTGGACTCGCTGCCAAGGCTCCTCTGGGAAGTCCCATGGGTGTAGTGGCGCTAGCTGAGGCATCTTATCTTTTGACATGCAGAACATGACTTGACCTCGTCTTCGATAGCTGCGTCCAGACCTGGCCACCAAAAGTAGCGGCGGGCAATCTCCTTCATTCACACCATGCCACAGTGCCCTGAATGGAGTTCTTCAAGCACCTGCCTTCTCAGTGGCGGTGGTATGATGACTCGAAAACCACATAGCAAACGTCCAAACTGAACTGTGAGCTCGTTTCTCCTCACTAGGTAAGGTTGTAGGCTGTCCAACATTTCTTCTTTTCCACGAGTGACAATGTCCACGACCGCCGACATCACTGGATCAGTGTGGGTGACCTTTTTCACTTGGACAGAAGTAACTAGGGCGTTCGTCACTTCCTTAAAGTAGAAGATTTCAGCCTGGGAGTGCTCAGTGTGTGCGACAGGTAAGGGAAGCCTTGAGAGGCCGTCTGCATTGCAGTGCTGCTCAGAACTTCGGTACTTGATATCGTACTGGTGAGCAAATAACAACCATCGCTTGAATGCCGGTGGTGTGGGGACCAAAGATGGAGGTGAGGGGTCTATGGTCCGTCAGCAGTGTGAATCAACGGCCAAACAGAAACTGATGACATTTCTTTACTCCAAACACAATGACGAGTGCTTCACGCTCTATCTGTGCATAATTGCTCTCGGCTTTACTTAAGGTCCGTGATGCAAAAGCGATTGGCCTTTCTTCACCTGATGGCATGATGTGTGAGACAACCGCACCAACGCCATAAGGCGATGCATCACATGCCAACTGTAATGGCAAGTTGGGGTTGAAGTGAGTTAGGGCCTCTGAGCTAAGGCCATTTTCACTTTCTTGAAAGCCTCCTCACATCTGTCTGTCCACTTCCACTGTTGGGTTGTGTTCAAAAGTACATGCAGTGGCTTTAACATGTTAGCTAGGTTTGGCACAAAGATTGTGTAGTATGTCAGTAGTCCTAAGAATGATCACAGCTGACTCACGTTCTGTGGGGATGAAGCTTCCGCAATATCTTTGCTGTCTGAGGCTGTATAGAAGGAGAAACTACATCACCTTACACTACAGCCCACAAAGATGACTCTGAAAACATACAGTGAGAGGAAGCGTGACCAAAGTTTTTATGGCGTATGGGACAGGTCTAGCTTTGAAGCATTTGGgttgctgtctggtttcagtcaGGTTATGTCCTTTATTCTGCCAAGTTCTCCTTTGAACACATCTGCGTGTTTCCTCAATATCCCTTGTAGGTTGGTGTCCTCTTTTGCAGCCATGTGAATTTCCTGCCAGTTTAGTTTGATCTTTACCAGCCATGTGCGTCCTAGCAATGCTGGATGGTTACCTTTCACAATGTAGAGTGGTAGCTTTACCTTCTGTTTGTTGAGCTCCACTGTAAGAATCATACTTCCTCTCACTGTATGTTTTCAGAGTCATCTTTGTGGGCTGTAGTGTAAGGTGATGTAGTTTCTCCTTCTATACAGCCTCAGACAGCAAAGATATGGCTGCTCCAATGTCCACTTGCATCCGTACTGCATTTCCATCCAGTAGCGGTGTCACCCAGTACCCGTATCCATTGTCTGAAATTAACATAACATGCAAAAATTCCTCCCCTTCAGACACTTTGTTCATCCTCTGTGTGCTCCATTTTATGCACTTCCTTTTTGTACTTCCTGAAGTGGCTTTTCCTTTGTTCAGTACTTTTGTTTGATTGTGTCTTTTGGTTTTTACATGCACATTTGATGTGACCCTTTTTTCCACAACTTCTGCAGCCTAAGTCTTTGCACCAACACTCCTCTGCTTGGTGATACTGCTTGGTGATCTGGTTTCCCACAGCAATAGCATGGCTTCCCACCTCCTGCCTTGTTTTTTAACCACGTAGACACCTTATGCACTTTGGTCGATGCACTTAGCTGTTGTGCGTCTTTATTTGCCATTTCCATTGACGTACTCAACATTACAGAGAGCAATAGAAGTTACTCTCAGTCAAAAGGCGTTTCTGAATTGCCTCGCTGCGCATGCCACACATTAACCCATCACGTATAGATAGGGTCACTCATTGCTCGCCCAAATTCACAGTTTTCAGATTACTGTTTCAAACAGCCACAAACAGATCGATTCCCTCCCCTCTTGATTTCTCTTATGAAACCGGAATCTCTGCGATTATCAGTGGTTTGGGAGAATGTCTTTTTAAAAAGGTAGACAATTTCATCATATGATTTATCACCAGGTTTTTCAGGCATTACTAGGCTGCGCAGTAGATTGAATGTTTTTCCTCCCATAAGTCAAAAATGTTGGCACAACAACTTCTGCTTTAATTCCATTTGCCAACACAAAGTACTCAATACATTCATCAAATGTTCCTACATTTCCAATCAATGCAGATATTTTCGGTTTATTTTTATTTCGCACACTTTTCAGACGGTCCCGTACtcccagacccttttcttttttttaactcATGCTGACTTCACTTTCTCACGCAGCGAAATTCTTTCTATCCCTCGAGGCCGTGACATCAAAGGCTAGCTAGCATCACTCAACTGGTTAGCTCCACGTTTTGTTTGAGTCTTTCTAAAgctgatttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141892 lncRNA downstream 21851 21965725 ~ 22029572 (-) True G122833
TU141916 lncRNA downstream 36136 22014720 ~ 22015287 (-) True G122849
TU141889 lncRNA downstream 36921 22012926 ~ 22014502 (-) True G122830
TU141888 lncRNA downstream 37867 22011964 ~ 22013556 (-) False G122830
TU141909 lncRNA downstream 57919 21989901 ~ 21993504 (-) True G122844
TU141988 lncRNA upstream 47031 22103168 ~ 22104400 (-) True G122909
TU141946 lncRNA upstream 58563 22114700 ~ 22117358 (-) False LOC110537847
TU141951 lncRNA upstream 58563 22114700 ~ 22117941 (-) True LOC110537847
TU142006 lncRNA upstream 65637 22121774 ~ 22122035 (-) False LOC110537842
TU142003 lncRNA upstream 93790 22149927 ~ 22155935 (-) True G122914
XM_036941837.1 mRNA downstream 329788 21713005 ~ 21721635 (-) False LOC110537643
XM_036941829.1 mRNA downstream 329788 21713006 ~ 21721635 (-) True LOC110537643
XM_021623793.2 mRNA downstream 403937 21645294 ~ 21647486 (-) True cnfn
LOC110534450 mRNA downstream 417778 21631390 ~ 21633645 (-) True LOC110534450
XM_036961756.1 mRNA downstream 454888 21595236 ~ 21596535 (-) True LOC118944069
XM_021624276.2 mRNA upstream 59512 22115649 ~ 22117961 (-) False LOC110537847
XM_021624284.2 mRNA upstream 59702 22115839 ~ 22118083 (-) False LOC110537847
LOC110537842 mRNA upstream 64442 22120579 ~ 22127548 (-) False LOC110537842
XR_005035698.1 mRNA upstream 116555 22172692 ~ 22175353 (-) False LOC110537803
XM_036942258.1 mRNA upstream 116767 22172904 ~ 22175353 (-) True LOC110537803
TU141887 other downstream 23706 22026299 ~ 22027717 (-) True G122829
TU141817 other downstream 195522 21851433 ~ 21855901 (-) False G122761
TU141778 other downstream 238991 21796507 ~ 21812432 (-) True G122733
TU140631 other downstream 504386 21490267 ~ 21547037 (-) False G121756
TU140595 other downstream 588393 21462693 ~ 21463030 (-) True G121738
TU142002 other upstream 64443 22120580 ~ 22157534 (-) False LOC110537842
TU141995 other upstream 73477 22129614 ~ 22155729 (-) False LOC110537842
TU141996 other upstream 73477 22129614 ~ 22157534 (-) False LOC110537842
TU141994 other upstream 93380 22149517 ~ 22155729 (-) True LOC110537842
TU142062 other upstream 320016 22376153 ~ 22378160 (-) True G122972

Expression Profile