RNA id: TU141216


Basic Information

Item Value
RNA id TU141216
length 339
lncRNA type intronic
GC content 0.35
exon number 2
gene id G122256
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22429810 ~ 22431364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacaaactacaggccactaattaccctggtttaaatgaagatatggatttacaaactacaggccactaaataccctggtttaaatgaagatatggatttacaaactacaggtcactaaataccctggtttaaatgaagatatggatttacaaactacaggccactaaataccctggtttaaatgaagatatggatttacaaactacaggccactaagtaccctggtttaaatgaagatatggatttacaaactacaggccactaagtaccctggtttaaatgaagatatggatttacaaactacaggccactaaataccctggtttaaatgaagatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141198 lncRNA upstream 18039 22411861 ~ 22412408 (+) True G122242
TU141180 lncRNA upstream 55797 22373992 ~ 22374650 (+) True G122225
TU141087 lncRNA upstream 114389 22314445 ~ 22316058 (+) True G122135
TU141003 lncRNA upstream 257396 22172712 ~ 22173051 (+) True G122065
TU141027 lncRNA upstream 328165 22102015 ~ 22102282 (+) True G122077
TU141290 lncRNA downstream 142753 22574117 ~ 22578051 (+) True G122325
TU141296 lncRNA downstream 149140 22580504 ~ 22583666 (+) True G122330
TU141308 lncRNA downstream 185068 22616432 ~ 22620371 (+) True G122340
TU141322 lncRNA downstream 199964 22631328 ~ 22631883 (+) True G122350
TU141388 lncRNA downstream 297018 22728382 ~ 22728884 (+) True G122415
XM_036961789.1 mRNA upstream 38268 22390731 ~ 22392179 (+) True LOC118944072
XM_021624444.2 mRNA upstream 45690 22381333 ~ 22384757 (+) True LOC110537956
NM_001124260.1 mRNA upstream 52297 22376139 ~ 22378150 (+) True apoc2
XM_021624431.2 mRNA upstream 74380 22352969 ~ 22356067 (+) True LOC110537948
XM_021624406.2 mRNA upstream 80511 22348543 ~ 22349936 (+) False apoc4
XM_021624473.2 mRNA downstream 64757 22496121 ~ 22544404 (+) False LOC110537974
XM_036942454.1 mRNA downstream 98595 22529959 ~ 22544404 (+) False LOC110537974
XM_021624466.2 mRNA downstream 102671 22534035 ~ 22544404 (+) True LOC110537974
XM_021625029.2 mRNA downstream 423375 22854739 ~ 22856678 (+) True LOC110538298
XM_021625050.2 mRNA downstream 425206 22856570 ~ 22858072 (+) True LOC110538314
TU141081 other upstream 80511 22348583 ~ 22349936 (+) True apoc4
TU141079 other upstream 83832 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other upstream 83942 22342527 ~ 22346505 (+) True LOC110537939
TU140958 other upstream 411632 22016662 ~ 22018815 (+) False G122030
TU140829 other upstream 605353 21821214 ~ 21825094 (+) True LOC110537735
TU141439 other downstream 379403 22810767 ~ 22811263 (+) True G122459
TU143220 other downstream 1393329 23824693 ~ 23825502 (+) True G123980
TU143245 other downstream 1430553 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other downstream 1430553 23861917 ~ 23881636 (+) True LOC110538497
TU143372 other downstream 1715497 24146861 ~ 24148593 (+) True G124121