RNA id: TU142259


Basic Information

Item Value
RNA id TU142259
length 615
lncRNA type intronic
GC content 0.43
exon number 3
gene id G123149
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22610750 ~ 22624269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtgagattgacagtggagggggtaatgtgagattgacagtggaaggggtaatgtgagattgacagtggaagggggtatatgagattgacagtggaagggggtatgtgagattgacagtgaaaggtgtaatgtgagattgacagtggaatttataatgtgagattgacagtggaaggggtaatttgagattgacagtggaagatgtaatgtgagattgacattGGAAGGGGGTATGTGAGGTTGACAGTGGAATGGGTAATGTGAGGTTGACATTAAAAGGTGTAATGTGAGATTggcagtggaaggggtaatgtgagattgacagtggaaggggtaatgtgagattgacagtggaaggggtaatgtgaatTTTACAGTGGAaggtgtaatgtgagattgacagtggaaggtgtaatgtgagattgacagtgaaAGGGGTAATGTGAatttgacagtggaaggggtaatgtgagattgacagtcgaaggggtaatgtgagattgacagtggaaggtgtaatgtgagattgacagtggaagggttAATgggagattgacagtggaaggggtaatgtgagattgacagtggaaggggtaatgtgagattgacagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142220 lncRNA downstream 17619 22586658 ~ 22593131 (-) True cadm4
TU142187 lncRNA downstream 35428 22481870 ~ 22575322 (-) True G123090
TU142184 lncRNA downstream 136546 22473454 ~ 22474204 (-) True G123088
TU142139 lncRNA downstream 225954 22384146 ~ 22384796 (-) True G123044
TU142057 lncRNA downstream 254678 22354585 ~ 22356072 (-) True G122967
TU142274 lncRNA upstream 17518 22636042 ~ 22636625 (-) False G123158
TU142276 lncRNA upstream 17518 22636042 ~ 22660713 (-) True G123158
TU142377 lncRNA upstream 147729 22766253 ~ 22767773 (-) True G123247
TU142369 lncRNA upstream 156583 22775107 ~ 22776439 (-) False si:ch211-79k12.2
TU142367 lncRNA upstream 158207 22776731 ~ 22777311 (-) True si:ch211-79k12.2
XM_036942468.1 mRNA downstream 17563 22552868 ~ 22593187 (-) False cadm4
XM_036942464.1 mRNA downstream 17574 22550928 ~ 22593176 (-) False cadm4
XM_021624488.2 mRNA downstream 79694 22525184 ~ 22531056 (-) True rps19
XM_036942438.1 mRNA downstream 111604 22399657 ~ 22499146 (-) False bcam
XM_036942515.1 mRNA upstream 136828 22755352 ~ 22774315 (-) False LOC110534479
XM_036942519.1 mRNA upstream 136828 22755352 ~ 22774315 (-) True LOC110534479
XM_021624514.2 mRNA upstream 155984 22774508 ~ 22779710 (-) False si:ch211-79k12.2
XM_036942491.1 mRNA upstream 161520 22780044 ~ 22791782 (-) False LOC118938460
XM_036942482.1 mRNA upstream 161520 22780044 ~ 22791793 (-) False LOC118938460
TU142062 other downstream 232590 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 453216 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 386462 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 567116 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 661655 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1285315 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1540643 24159167 ~ 24161443 (-) True LOC110538705