RNA id: TU142413


Basic Information

Item Value
RNA id TU142413
length 839
lncRNA type intronic
GC content 0.36
exon number 1
gene id G123281
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22876235 ~ 22877073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttttttctttacatagttgaatgtgctgacaacaaaatcacacatcaatggaaatcaaatttatcaacccatggaggtctggatttggagtgacactcaaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgtccttaaaacaagtcaaaatgaggctcagtagcgtgtgtggcctccacgtgcctgtatgacctccctacaacgcctgggcatgctcccgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatcagGGAAACTCCTGGGCAGTCTGTGGtgcatggagcgagacatgatgtgctcaattggattcaggtctggggaacgggtgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagtcacatgaggtctagcattgtcttgcattaggaggaacccagggccaaccgcaccagcatatggtctcacaaggggtctgaggatctcatctcggtacctaatggcagtcaggctacctctggcgagcacattgagggctgtgcggccccccaaagaaatgccaccccacaccatgactgacccaccgccaaaccggtcatgctggaggatgttgcaggcagcagaacgttctccaccgcatctccagactgtcacgtctgtcacgtgctcagtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtcgggccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142408 lncRNA downstream 12981 22860225 ~ 22863254 (-) True G123277
TU142372 lncRNA downstream 21104 22854889 ~ 22855131 (-) True G123242
TU142370 lncRNA downstream 29772 22845750 ~ 22846463 (-) True G123240
TU142363 lncRNA downstream 36699 22838771 ~ 22839536 (-) True G123234
TU142368 lncRNA downstream 53216 22822697 ~ 22823019 (-) True LOC110538050
TU142415 lncRNA upstream 12659 22889732 ~ 22889979 (-) True G123283
TU142428 lncRNA upstream 41255 22918328 ~ 22918547 (-) True G123296
TU142431 lncRNA upstream 46121 22923194 ~ 22923601 (-) True G123299
TU142432 lncRNA upstream 46753 22923826 ~ 22924025 (-) True G123300
TU142451 lncRNA upstream 53863 22930936 ~ 22931634 (-) True G123310
XM_036942890.1 mRNA downstream 22389 22853130 ~ 22853846 (-) True LOC110534486
XM_036942747.1 mRNA downstream 25385 22847803 ~ 22850850 (-) True LOC118936533
XM_036942621.1 mRNA downstream 30754 22839988 ~ 22845481 (-) True LOC118938551
XM_021624614.2 mRNA downstream 37734 22829783 ~ 22838501 (-) False LOC110538050
XM_021624738.2 mRNA upstream 6905 22883978 ~ 22899520 (-) False im:7147486
XM_021624747.2 mRNA upstream 6905 22883978 ~ 22899520 (-) True im:7147486
XM_021624595.2 mRNA upstream 30013 22907086 ~ 22949770 (-) False LOC110538037
XM_021624604.2 mRNA upstream 30013 22907086 ~ 22949770 (-) True LOC110538037
XM_021624811.2 mRNA upstream 76508 22953581 ~ 22965449 (-) True si:dkeyp-84f3.5
TU142062 other downstream 498075 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 718701 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 127913 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 308567 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 403106 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1026766 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1282094 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile