RNA id: TCONS_00028219


Basic Information

Item Value
RNA id TCONS_00028219
length 1758
RNA type mRNA
GC content 0.58
exon number 11
gene id XLOC_014168
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33553586 ~ 33785914 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGCCAGATCGCACTGAGAAGCGCTCCACCATGCCCGACTCACCTGCTGATGTGAAAACACAGTCCAGGTTAACTCCGCCCACCATGCCTCCTCCCCCCACCACACAGGGAGCTCCCAGGACCAGCTCCTTCACCCCCACAGCATTAACGAATGGCACCAGTCACTCTCCCACTGCACTAAATGGAGCTCCATCTCCACCCAATGGCTTCAGCAATGGGCCTtcgtcatcatcttcatcctcgCTGGCCAATCAACAGCTGCCACCGGCCTGTGGAGCAAGGCAGCTGAGCAAGCTCAAACGCTTCCTCACAACACTACAGCAGTTCGGCAATGACATCTCGCCTGAGATAGGAGAACGAGTTCGCACGCTGGTCTTAGGACTTGTGAACTCCACTCTAACCATTGAGGAATTCCACTCCAAACTGCAAGAAGCGACCAACTTCCCACTCCGACCGTTTGTCATCCCGTTTCTGAAGGCCAATCTCCCGCTACTGCAGAGGGAACTGGTGCACTGTGCACGGCTGGCCAAGCAGAACCCGGCTCAATACCTAGCCCAACATGAGCAGCTCCTGCTGGACACAAGCACCACGTCGCCTGTCGACTCGTCTGAACTCTTGATGGACGTCAACGAGAATGGCAAGAGAAGAACACCTGACAGAACCAAAGAGAACGGCTTTGAGCGGGAGCCCCTTCATCCTGAGCACCCCAACAAGAGGCCCTGCACTATAAGCCCGGGACAGCGCTTCAGCCCCTCCAACGGGCTCTCCTACCAGCCCAATGGCCTTCCACACCCCACACCACCCCCTCCACAGCACTACCGTCTGGACGACATGGCTATCGCACACCACTACAGAGATTCCTATCGTCACCCCAACCACCGCGAGCTCCGCGACCGCCCTCGGCCACTGGGGATGCACGGCAGCAGCACACGCCAGGAGGAAGTCATAGATCACAGACTCACAGACAGAGAATGGGCAGAAGAGTGGAAGCACCTTGACCATGTAAGAAAaCTCCTGAACTGCATTATGGATATGGTGGAGAAGACACGTCGCTCATTGACAGTGTTGCGGAGGTGCCAGGAGACTGACCGAGAAGAGCTCAACTACTGGATCCGGCGTTACAGCGATGCTGAAGACCTTAAAAAAACCAGCAGCACTAGCACCAGTCAGTCAAGACAACAGAGTCCCGCTAGCCAAGAAGGCAATGCTTTAGAAGTACATAGGGAGCTCCTTCACAGGCCAGTGTCTGGATACGTACCTGAAGAAATCTGGAAGAAAGCCGAAGAGGCTGTGAATGAAGTGAAGAGGCAGGCCATGTCTGAGCTGCAGAAAGCCGTGTCAGAGGCTGAGCGCAAGGCACACGAGATGATCAGCACAGAGCGAGCCAAGATGGAGCGCACGGTGGCTGAGGCCAGGAGGCAAGCAGCAGAGGACGCGCTGTCAGTCATCAACCAGCAGGAGGACTCCAGTGAGAGTTGCTGGAATTGTGGGCGCAAGGCGAGCGAGACCTGCAGCGGCTGCAACACGGCGCGTTACTGCGGTTCCTTCTGCCAGCACAAAGACTGGGAAAAGCACCACCACGTGTGTGGCCAGACACTGCAGGCCCAGCAGCAGGGTGAGACCCCTGCCACCGTCAGCTCTTCAGCCACTCCCAGCAGCGGAGCTGGAAGTCCAGCAGACACACCGTCTGCCGCCGCCACTCCTCGCTCAGCCACACCCGGCACGCCCTCCACCGTGGAGAACACGCCGCGCTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko05200 Pathways in cancer
ko05202 Transcriptional misregulation in cancer
ko05221 Acute myeloid leukemia
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-060929-164 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in protein autophosphorylation. Predicted to act upstream of or within negative regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human RUNX1T1 (RUNX1 partner transcriptional co-repressor 1).

Ensembl:

ensembl_id ENSDART00000010294

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029973 lncRNA upstream 42127 33553634 ~ 33690360 (+) False XLOC_014168
TCONS_00029974 lncRNA upstream 42127 33574314 ~ 33690360 (+) False XLOC_014168
TCONS_00029972 lncRNA upstream 71551 33553613 ~ 33660936 (+) False XLOC_014168
TCONS_00028211 lncRNA upstream 255012 33464709 ~ 33477475 (+) False XLOC_014167
TCONS_00029971 lncRNA upstream 951569 32765283 ~ 32780918 (+) True XLOC_014159
TCONS_00029975 lncRNA downstream 12919 33795748 ~ 33798410 (+) True XLOC_014169
TCONS_00029976 lncRNA downstream 497935 34280764 ~ 34281978 (+) True XLOC_014176
TCONS_00029977 lncRNA downstream 918848 34701677 ~ 34738365 (+) True XLOC_014178
TCONS_00029978 lncRNA downstream 966209 34749038 ~ 34751777 (+) True XLOC_014180
TCONS_00029979 lncRNA downstream 1104746 34887575 ~ 34914799 (+) True XLOC_014181
TCONS_00028212 mRNA upstream 216745 33476557 ~ 33515742 (+) True XLOC_014167
TCONS_00028210 mRNA upstream 220791 33464688 ~ 33511696 (+) False XLOC_014167
TCONS_00028209 mRNA upstream 592084 33139164 ~ 33140403 (+) True XLOC_014166
TCONS_00028207 mRNA upstream 594767 33093395 ~ 33137720 (+) False XLOC_014165
TCONS_00028220 mRNA downstream 67876 33850705 ~ 33876245 (+) True XLOC_014170
TCONS_00028222 mRNA downstream 386226 34169055 ~ 34217362 (+) False XLOC_014172
TCONS_00028223 mRNA downstream 386226 34169055 ~ 34218156 (+) False XLOC_014172
TCONS_00028224 mRNA downstream 397498 34180327 ~ 34217364 (+) True XLOC_014172
TCONS_00028226 mRNA downstream 447279 34230108 ~ 34259666 (+) True XLOC_014174
TCONS_00028194 other upstream 913913 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028183 other upstream 1673888 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028175 other upstream 2140947 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028174 other upstream 2141996 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028165 other upstream 2384139 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028221 other downstream 352778 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028225 other downstream 424333 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028229 other downstream 959877 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028237 other downstream 1996013 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028239 other downstream 2420249 36203078 ~ 36203195 (+) True XLOC_014193

Expression Profile

//