RNA id: TCONS_00029975



Basic Information


Item Value
RNA id TCONS_00029975
length 1082
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_014169
representative True

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33795748 ~ 33798410 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


cgttgttgcagtcaactcctctctgcatctcaaatccaccGACGTACAGCAgcaaagccgtccatacggagGAGAAAAATCTAAAGGGGGTTGAGAAGCTGCTGTGCATTAATAAGGACCGGTCAGAACTGGAAACACCTCTGCAGTTACTGTACATATATAGAGACAGCACAAGAGAATCACCTGCAGGCCCCCTGAAACTGAACCCCAGAAAAATGCCGACGTGCACAGCGCCAGAAGCCCAGAGCTGTGGGTCTTACCCAGCTGAGATGACTGATGGCTAATGAGAGCAGAGTGAGGACCAGGCCGACTGCTACCCACTGTGTGTTTAAAGCATGATTGATGCTTTTCATGGCTCCCGAGCCCCCCTCTTCACAGGAACAGCTTGCTCTAAACACACAGGGCAGCACTTGCTGACTTAAATACAAACTTTGTGTTTACGAGAGCCAGCCTAGTGCACAATAAAACTTTAGGAGGCATATGGAACCCACAACTTTTAGACCTCACTGGATGTGCTCTGCTTACTGTCAGTTGCCTTGGCTTGAACCTGCTGCAGCTGTGAAACAGGCGCGTGGCTCATCTTATGACCTTGATGCAATGTAAAATGGAGAATCGCACGGTCAGGGCCTTGGTAGTAATGTTTTAATCAATTCTGGGTCCGTCGGATCGTCATAGTTCCGGGAATTTTCCATCAACCCAGCATGATTTTGGCAGCAGAAGCGTCTGAATTCATGGAGTGGGATTGTGTGCTATCCATCATCATGCTAATATAGTCTTCCAGAAAGGACTTCTCGTGTGAGATATCACACCAACGCCATCCAGGCTGCCATCGACGGATTATTGCAGCCAGCTGATGCATTTTCGTAATCTGTTTTGTAAACTGTTTTGAGAAATACTGCTAAAGAGATCTCAGCGGGCAAGTTTCAGAGTAAACAGAGATGCCGTACACTGTGTTTTTCCAAGTGCTTATTATGTTGATAAATGCGACTTTCAGTTTGCCAGCAAGAGGCGATACAGAGGAGCAGCTGGGTCAGGTGCTACGCAACATGCAGTACGAATCTTCCCTTTTTAGAATCAAATAT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00029973 lncRNA upstream 105388 33553634 ~ 33690360 (+) False XLOC_014168
TCONS_00029974 lncRNA upstream 105388 33574314 ~ 33690360 (+) False XLOC_014168
TCONS_00029972 lncRNA upstream 134812 33553613 ~ 33660936 (+) False XLOC_014168
TCONS_00028211 lncRNA upstream 318273 33464709 ~ 33477475 (+) False XLOC_014167
TCONS_00029971 lncRNA upstream 1014830 32765283 ~ 32780918 (+) True XLOC_014159
TCONS_00029976 lncRNA downstream 482354 34280764 ~ 34281978 (+) True XLOC_014176
TCONS_00029977 lncRNA downstream 903267 34701677 ~ 34738365 (+) True XLOC_014178
TCONS_00029978 lncRNA downstream 950628 34749038 ~ 34751777 (+) True XLOC_014180
TCONS_00029979 lncRNA downstream 1089165 34887575 ~ 34914799 (+) True XLOC_014181
TCONS_00029980 lncRNA downstream 1563070 35361480 ~ 35363590 (+) True XLOC_014185
TCONS_00028215 mRNA upstream 9834 33701558 ~ 33785914 (+) False XLOC_014168
TCONS_00028213 mRNA upstream 12919 33553586 ~ 33782829 (+) False XLOC_014168
TCONS_00028214 mRNA upstream 12919 33701366 ~ 33782829 (+) False XLOC_014168
TCONS_00028219 mRNA upstream 12919 33732487 ~ 33782829 (+) True XLOC_014168
TCONS_00028216 mRNA upstream 23155 33701734 ~ 33772593 (+) False XLOC_014168
TCONS_00028220 mRNA downstream 52295 33850705 ~ 33876245 (+) True XLOC_014170
TCONS_00028222 mRNA downstream 370645 34169055 ~ 34217362 (+) False XLOC_014172
TCONS_00028223 mRNA downstream 370645 34169055 ~ 34218156 (+) False XLOC_014172
TCONS_00028224 mRNA downstream 381917 34180327 ~ 34217364 (+) True XLOC_014172
TCONS_00028226 mRNA downstream 431698 34230108 ~ 34259666 (+) True XLOC_014174
TCONS_00028217 other upstream 30023 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028194 other upstream 977174 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028183 other upstream 1737149 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028175 other upstream 2204208 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028174 other upstream 2205257 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028221 other downstream 337197 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028225 other downstream 408752 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028229 other downstream 944296 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028237 other downstream 1980432 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028239 other downstream 2404668 36203078 ~ 36203195 (+) True XLOC_014193

Expression Profile


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