RNA id: TU142449


Basic Information

Item Value
RNA id TU142449
length 827
RNA type TUCP
GC content 0.48
exon number 1
gene id G123308
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23004986 ~ 23005812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttggggctgttgctgggcaacacggactttcaactccctccaaagattttctaaagggctgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcatcctggtccctttgcagaaaagcagccccaaagcatgatgtttccacccccatgcttcacagtaggcatggtgttctttggatgcaactcagcattctttgtcctccaaacacgatgagttgagtttttaccaaaaagttatattttggtttcatctgaccatatgacattctcccaatcttcttctggatcatccaaatgctctctagcaaacttcagactggcctggacatgtactggcttaagcagggggacacgtctggcactgcaggatttgagtccctggcggcgtagtgtgttactaatggtaggctttgttactttggtcccagctctctacaggtcattcactaggtccccccgtgtggttctgggatttttggtcacagttcttgtgaacattttgaccccacggggtgagatattgcgtggagccccagatagagggagattatcagtggtattgtatgtcttccatttcctaataattcctcccacagttgatttctacaaaccaagctgcttacctgttgcagattcagtcttcccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142445 lncRNA downstream 1074 23002206 ~ 23003912 (-) False G123306
TU142444 lncRNA downstream 1074 23002341 ~ 23003912 (-) True G123306
TU142498 lncRNA downstream 9761 22994979 ~ 22995225 (-) True G123348
TU142496 lncRNA downstream 11712 22993062 ~ 22993274 (-) True G123346
TU142453 lncRNA downstream 14358 22931756 ~ 22990628 (-) True G123311
TU142446 lncRNA upstream 27 23005839 ~ 23006807 (-) True G123307
TU142438 lncRNA upstream 4824 23010636 ~ 23040313 (-) False G123304
TU142439 lncRNA upstream 4824 23010636 ~ 23040313 (-) True G123304
TU142440 lncRNA upstream 11108 23016920 ~ 23018214 (-) True G123305
TU142513 lncRNA upstream 44553 23050365 ~ 23050929 (-) True G123363
XM_021624985.2 mRNA downstream 33446 22968051 ~ 22971540 (-) True LOC110538268
XM_021624811.2 mRNA downstream 39537 22953581 ~ 22965449 (-) True si:dkeyp-84f3.5
XM_021624595.2 mRNA downstream 55216 22907086 ~ 22949770 (-) False LOC110538037
XM_021624604.2 mRNA downstream 55216 22907086 ~ 22949770 (-) True LOC110538037
XM_021624738.2 mRNA downstream 105466 22883978 ~ 22899520 (-) False im:7147486
XM_021624724.2 mRNA upstream 113570 23119382 ~ 23123886 (-) False LOC110538089
XM_021624700.2 mRNA upstream 113570 23119382 ~ 23126698 (-) False LOC110538089
XM_036942639.1 mRNA upstream 113570 23119382 ~ 23126698 (-) False LOC110538089
XM_021624691.2 mRNA upstream 113570 23119382 ~ 23128065 (-) False LOC110538089
XM_021624716.2 mRNA upstream 113570 23119382 ~ 23128065 (-) False LOC110538089
TU142062 other downstream 626826 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 847452 22120580 ~ 22157534 (-) False LOC110537842
TU141996 other downstream 847452 22129614 ~ 22157534 (-) False LOC110537842
TU141995 other downstream 849257 22129614 ~ 22155729 (-) False LOC110537842
TU141994 other downstream 849257 22149517 ~ 22155729 (-) True LOC110537842
TU142589 other upstream 179828 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 274367 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 898027 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1153355 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 1263414 24269226 ~ 24270136 (-) True G125003

Expression Profile