RNA id: TU141594


Basic Information

Item Value
RNA id TU141594
length 1703
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G122575
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23010422 ~ 23012373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccactacttacctaatttagcaccacctggtgccctaaccaaaatacagggggtggtccgcccaggtcttacctagtgtgcctagacagtgaatatactacgggtatatgtatgcccgcgggcctcttgcctaagcactcccaaggtgccttccccttcccccctgggaacaaatgaaacagaatattaaacaatttcacaaactaagaaacaaaggacatcaaataagctctacctgagcaacaaactcacagaacataccaacttcccagcaatgaactcccatcaAAATTATCTAGCAAAATCTCTGCAATaacctcccagcaaatctctctcacattcaatctctctgcaatgacctcccagcaaactctctcacattcaatctctctgcaatgacctcccagcaaatctctcgCAAATCTCTCTGGCAAAATCCCtatgcaatgacctcccagcaaatctttctctcctgaacagaacactggcttttatatagcttcagaaggaacaggtaattggagacagctgcgtcTTTACGAGGGGGCGGGGtaagctctccaattagccctggagtcgaccaatcagctgcttgagggatttcaggaagccatttcctgaaataaacacatgcaaatacacaaactacaactcataaactggggaacgtaactaCCTAGAACATTAAAGGGTTCTGCGGCTGTACCCATAGGACAGGGTCATTTTGggagtgcacgttttggtttttgtccTAGCATTACACAGctcattcaaataatcaactaatcatcattATTTGATCATTTGAGTCAGCAGTGTagtgttagagcaaaaaccaattgTACccagagtttgggaaacgcttaTTTAGAAAAAATATTTTTCCTGGTTAGAACtgttctggttccaggtagaaccctttccccggaggtttctacatggaatccaaaataGTTATTGACAagaaaaggagagccgcacactctaggagcaacaacgtttCAACAGCCAAGCTGTCCTCAtcaggattctacctggaaccaaaaaagagagagatcgagggagagaggtcagagactcagaacacagagagagacaaaatggGCACCATGCTACACATTGATGGTGAATGGGGAGTCCCCACCATACAACACACATAAAGGAATATGGGACTTGAATGAActtctctctgcaacactattatcaCCTATGAGGTGGTAGTAGTCTGACTAAGGAGCGCTGGTCAGAGTAGATCTCACACTGGTCAGAGTAGATCTCACACTGGTATGTACCCTGGTTTCACAGACCAGCTGAGGGGATAGAGTAGAGCCGGTCTATCCCTACGGTCACCTCCTCAAACTGATCCACCTGCTGGGTCCCGATCTGCAAGTCAGGGGACAACATGACTGCACAATCCTCTGATCTTCACTCACTACAAAGGAATCATGTCTAAATGGAAGTTTCAGGAAAAGGGATGGTTTCATAACATGACTTCAATAATTCAGCTCATCTTTTGGGAGAGATTCTCATCTGAATACATACTTGGGCCCAGATTGTGAGGAATTGCAGTGGGTACTGTATAGTGATGGACATACTAGGCCATTATCACACACTGAAACACCCTAACCTTGTGGTCAAGCTGTTCTCAAGGGGCAGCAGAGTGGCAGTCTGAGCCCTCCTAATGATAATATTTAAATACAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141589 lncRNA upstream 4795 23001935 ~ 23005627 (+) False G122573
TU141588 lncRNA upstream 5762 23002250 ~ 23004660 (+) True G122573
TU141585 lncRNA upstream 8733 23001192 ~ 23001689 (+) True G122572
TU141584 lncRNA upstream 11285 22998771 ~ 22999137 (+) True G122571
TU141572 lncRNA upstream 27853 22982345 ~ 22982569 (+) True G122560
TU141621 lncRNA downstream 38410 23050783 ~ 23051094 (+) True G122593
TU141645 lncRNA downstream 85057 23097430 ~ 23097959 (+) True G122617
TU141659 lncRNA downstream 104392 23116765 ~ 23117208 (+) True G122630
TU141632 lncRNA downstream 105812 23118185 ~ 23118974 (+) True kcnn4
TU141661 lncRNA downstream 115309 23127682 ~ 23127926 (+) True G122632
XM_021624836.2 mRNA upstream 13048 22993751 ~ 22997374 (+) True LOC110538188
XM_021625050.2 mRNA upstream 152350 22856570 ~ 22858072 (+) True LOC110538314
XM_021625029.2 mRNA upstream 153744 22854739 ~ 22856678 (+) True LOC110538298
XM_036942454.1 mRNA upstream 466018 22529959 ~ 22544404 (+) False LOC110537974
XM_021625038.2 mRNA downstream 43408 23055781 ~ 23069547 (+) True LOC110538306
XM_036942767.1 mRNA downstream 64973 23077346 ~ 23119231 (+) False kcnn4
XR_005035904.1 mRNA downstream 64973 23077346 ~ 23119231 (+) False kcnn4
XM_036942781.1 mRNA downstream 74026 23086399 ~ 23119231 (+) False kcnn4
XM_021624878.2 mRNA downstream 115863 23128236 ~ 23135855 (+) False LOC110538208
TU141439 other upstream 199159 22810767 ~ 22811263 (+) True G122459
TU141081 other upstream 660486 22348583 ~ 22349936 (+) True apoc4
TU141079 other upstream 663807 22342527 ~ 22346615 (+) False LOC110537939
TU141080 other upstream 663917 22342527 ~ 22346505 (+) True LOC110537939
TU140958 other upstream 991607 22016662 ~ 22018815 (+) False G122030
TU143220 other downstream 812320 23824693 ~ 23825502 (+) True G123980
TU143245 other downstream 849544 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other downstream 849544 23861917 ~ 23881636 (+) True LOC110538497
TU143372 other downstream 1134488 24146861 ~ 24148593 (+) True G124121
TU143399 other downstream 1528631 24541004 ~ 24544226 (+) False LOC110538915

Expression Profile