RNA id: TCONS_00028222


Basic Information

Item Value
RNA id TCONS_00028222
length 2043
RNA type mRNA
GC content 0.51
exon number 11
gene id XLOC_014172
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34169055 ~ 34218156 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGGGCTGCGCTGCAGTGAACACGCGAATCCGTGACATTTACTTCAGCCATGTAACCCGTCAAAAGAGCGCTCGCTCGTAAGGACTCGAGCTTCTTAAAGCGATTAACGCGAGCGTTTGTACGGGTTTGTTgtttgaggaggaggaggaggaggcggaGGAGGATGTGTGTTTGCTGACAGCGGCACGAGCTGCTCCTCAGCGTTATATCTGTCCGAGAGCACGGCATGAAGAGATCAGGTTGGATCGTGATGCTCTTTGACTGGTGCTGTTAGTGGTGCTGGCTGCCAGGACATGAAGATCCGCTGGTCAAGGAAGGTGGCTGTCCTGGCCAAGGTCTGCTTCCTCTTTTCTCTGCTATGGCTCTTCTACCTCCTCATAGTGCGTTCTTCACCTCCATCTCTGGCTGATAATGATGGTCGGCGTGACATCCTGGCCCGTGACCTTCCACCCattgaggaggaagaggaggactCTGAAAACCTCCTGCGGCCCGTTTATGAAAAGCTACCGCCAGACTCCAACGCTCCTGGAGAATACGGACGAGCCACTCGACTGACCCTCACTTCTGAGGAAAAGAAAGAGGAGGAGGCTAGCGTTGAGCGCTACGCCATCAATATCTTCATCAGCGACAAGATATCTCTTCATCGCCATATTCAAGACAACAGGATGCATGAATGCAAAGCAAAGAAGTACAACATCCGTCGTCTCCCGACAACATCAGTGGTTATAGCATTTTACAATGAGGCCTGGTCTACTTTACTGAGAACCATCCACAGTGTGCTGGAGACCACACCGGCTGTCCTGCTGAAGGACATCATTCTAGTTGACGACTTCAGCGATAGAGGTTATCTGAAGTCACAGCTGGCACAGTATATCAGTAACCTGGAGCGTGTGCGTCTCATTCGGACAAAAAAAAGAGAAGGTCTGGTTAGGGCACGGCTCATTGGCGCCACCTACGCTACAGGAAGCGTGCTCACCTTCCTGGACTGCCACTGCGAGTGTGTGCCAGGCTGGATCGAGCCACTGCTGGAAAGAATTGCAGAGAATGAGACCACCATAATTTGTCCAGTAATCGACACTATTGACTGGAACACATTTGAGTTCTACATGCAGACAGAAGAGCCGATGGTGGGCGGTTTTGACTGGAGGTTGACATTTCAGTGGCATGCAGTGCCTGAAATTGATCGCAAGATACGCAAATCCAGAATTGACCCCATTAGGTCTCCCACTATGGCAGGAGGCCTATTTGCCGTCAGCAAGGCCTACTTTGAGTATCTTGGCACTTATGACATGGGCATGGAGGTCTGGGGAGGAGAGAATCTGGAACTTTCTTTCCGGGTATGGCAGTGCGGAGGGTCTTTAGAAATCCACCCATGCTCCCATGTGGGTCATGTGTTTCCCAAAAAAGCACCTTATGCTCGATCAAACTTCCTTCAAAACACAGTCCGAGCTGCAGAAGTATGGATGGACACATACAAGCAGCACTTCTACAACAGAAACCCTCCAGCACGCAAGGAATCGTATGGGGATATATCAGAAAGGATTGTCCTAAGAAATCGGCTTCAGTGTAAGAGCTTTGAGTGGTACCTGCAGAACGTTTACCCAGGACTGCATGTGCCAGAGGACAGGCCTGGCTGGCACGGAGCGGTTCGAAGTGCTGGAATCCACTCTGAATGTCTGGATTACAACGCCCCAGACCACAACCCCACAGGAGCTCACCTGTCCCTGTTTGGATGCCATGGTCAGGGCGGTAATCAGtACTTTGAGTACACATCTCAAAGGGAGATTCGCTTTAACTCCGTGACCGAGCTGTGCGCTGAAGTTCAAGATGGAATGACACACATCGGCATGAAGCATTGTCCGCAAGACGGCGTTCCCAAACCTCCCAGCATCATATGGCAGTTCAGAGAAGACGGCAGCATATTTCACCCTCATTCAAACATGTGTATCACCTCATATCGCACTGAAGAGGGCCGTGCAGATATCCAAATGAGAAGCTGCTCTACTGGAGACAAACACCAGCGCTGGAGCTTCGAGTGA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-41 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human POC1B-GALNT4 (POC1B-GALNT4 readthrough).

Ensembl:

ensembl_id ENSDART00000135592

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029975 lncRNA upstream 370645 33795748 ~ 33798410 (+) True XLOC_014169
TCONS_00029973 lncRNA upstream 478695 33553634 ~ 33690360 (+) False XLOC_014168
TCONS_00029974 lncRNA upstream 478695 33574314 ~ 33690360 (+) False XLOC_014168
TCONS_00029972 lncRNA upstream 508119 33553613 ~ 33660936 (+) False XLOC_014168
TCONS_00028211 lncRNA upstream 691580 33464709 ~ 33477475 (+) False XLOC_014167
TCONS_00029976 lncRNA downstream 63402 34280764 ~ 34281978 (+) True XLOC_014176
TCONS_00029977 lncRNA downstream 484315 34701677 ~ 34738365 (+) True XLOC_014178
TCONS_00029978 lncRNA downstream 531676 34749038 ~ 34751777 (+) True XLOC_014180
TCONS_00029979 lncRNA downstream 670213 34887575 ~ 34914799 (+) True XLOC_014181
TCONS_00029980 lncRNA downstream 1144118 35361480 ~ 35363590 (+) True XLOC_014185
TCONS_00028220 mRNA upstream 292810 33850705 ~ 33876245 (+) True XLOC_014170
TCONS_00028215 mRNA upstream 383141 33701558 ~ 33785914 (+) False XLOC_014168
TCONS_00028213 mRNA upstream 386226 33553586 ~ 33782829 (+) False XLOC_014168
TCONS_00028214 mRNA upstream 386226 33701366 ~ 33782829 (+) False XLOC_014168
TCONS_00028219 mRNA upstream 386226 33732487 ~ 33782829 (+) True XLOC_014168
TCONS_00028226 mRNA downstream 12746 34230108 ~ 34259666 (+) True XLOC_014174
TCONS_00028227 mRNA downstream 57142 34274504 ~ 34279173 (+) True XLOC_014175
TCONS_00028228 mRNA downstream 94012 34311374 ~ 34679738 (+) True XLOC_014177
TCONS_00028230 mRNA downstream 525344 34742706 ~ 34746878 (+) True XLOC_014179
TCONS_00028231 mRNA downstream 732838 34950200 ~ 34958185 (+) False XLOC_014182
TCONS_00028221 other upstream 33360 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028217 other upstream 403330 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028194 other upstream 1350481 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028183 other upstream 2110456 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028175 other upstream 2577515 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028229 other downstream 525344 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028237 other downstream 1561480 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028239 other downstream 1985716 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028240 other downstream 2025429 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028243 other downstream 2462729 36680091 ~ 36680207 (+) True XLOC_014197

Expression Profile

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