RNA id: TU142867



Basic Information


Item Value
RNA id TU142867
length 262
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G123660
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23252405 ~ 23252666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAAAATATGCCCAGACCCCAAATTTGGTCCTCTGAAATGTCCTTAATGTCTTTTTTTCTGGTTTCTTATCACGCTGTCCAATTGGAGTTCTGATGATGGTCAGAACAATAACATCTTGTAACCGTGTGTTGCAATCCCACGAGCAGGGTGGAAAACCATGGTCAGACCGTTCTGTTTCTATGCAGCTGAACAAGACCGCAAAACAATCAAAAACAAAACACTTGATTAACATTATGGATTCAGATCATATGTTTTATGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU142850 lncRNA downstream 15516 23236354 ~ 23236889 (-) True G123647
TU142609 lncRNA downstream 19910 23230139 ~ 23232495 (-) True LOC110538290
TU142582 lncRNA downstream 81363 23170798 ~ 23171042 (-) True G123429
TU142524 lncRNA downstream 128332 23123784 ~ 23124073 (-) True LOC110538089
TU142551 lncRNA downstream 138274 23113885 ~ 23114131 (-) True G123399
TU142863 lncRNA upstream 116 23252782 ~ 23255254 (-) True G123656
TU142870 lncRNA upstream 11637 23264303 ~ 23365923 (-) False G123662
TU142871 lncRNA upstream 11637 23264303 ~ 23365923 (-) True G123662
TU143045 lncRNA upstream 301533 23554199 ~ 23554769 (-) True G123821
TU143046 lncRNA upstream 302326 23554992 ~ 23555203 (-) True G123822
XM_021625016.2 mRNA downstream 18637 23224489 ~ 23233768 (-) False LOC110538290
XM_021624911.2 mRNA downstream 51449 23176460 ~ 23200956 (-) True LOC110538224
XM_021624901.2 mRNA downstream 61076 23176460 ~ 23191329 (-) False LOC110538224
XM_036942638.1 mRNA downstream 123395 23119382 ~ 23129010 (-) False LOC110538089
XM_021625073.2 mRNA upstream 9797 23262463 ~ 23267059 (-) True LOC110538325
XM_021625104.2 mRNA upstream 23372 23276038 ~ 23278328 (-) False hspb6
XM_021625096.2 mRNA upstream 23372 23276038 ~ 23278785 (-) True hspb6
XM_021625116.2 mRNA upstream 26450 23279116 ~ 23281851 (-) False LOC110538355
XM_021624998.2 mRNA upstream 122213 23374879 ~ 23379764 (-) False igflr1
TU142589 other downstream 53153 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 246593 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 874245 22376153 ~ 22378160 (-) True G122972
TU141996 other downstream 1094871 22129614 ~ 22157534 (-) False LOC110537842
TU142857 other upstream 27513 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 651173 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 906501 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 1016560 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 1071914 24324580 ~ 24324836 (-) True G125043

Expression Profile