RNA id: TU142863


Basic Information

Item Value
RNA id TU142863
length 2042
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G123656
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23252782 ~ 23255254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATACAACTTTAATTGAATGCATCTTTTTCAGTTACATTGAAAACAATAAGACGGTGGCAACACAGTGAGCGGCTGTGCATGAGACAGGTTGAAATGTCACTTGCTGATGGGAAAGCCTGTATGACATCAAACACTCATCTATGGGACCACTGTTTGCAGGAAGAAGAGTTTGTGTGCGGAGACATGGCTGCTATTGCAGCTGGGGTCCACTCTGACTAGTTGGAAGCGACGGTCTGGTCAATCCAGCCACGCAGGTAGGCGACACGGGAGTAGACGGCAGGGGTACTGATGTTACAGTTGCTGGTGCCCCAGGACACGATGCCCACCTGAAACCACACACCACTGCTCTGACACACCAGAGGACCGCCAGAATCAcTCCGGAGGCTCCGGCGCAGATCATGGCGTCAGTGATCCTGTTCTGGCCCCAGTACTGCTTGCACTGAGCAGGGCTCAGCAGAGGAAGGGCCACCTGCTGGAGGATACGGGGGCTTGCTGGGGACAGGGATCAGGGGACATGGTTAGGAAGGAGCTTAGTGCTCTAATGAAAGCTGAGGTGGAAACATTAGCATCCATTTGCACATACTCTTGTATTAACTGTAAATCTATCATGTATCAATAATGGTTCAGTAGCTTGTGTGGCCACTCACAGGTGGTGCCAGTCTTGCCCCAGCCAGTGGTGACACAGCGGGTTCCAGAGGGGAAGGAGGTGCTAGAGGTGGCCAGGCACACAGGGGACACGCGGGCGGTGATCTGGACGGGGGAGGACAGCTTCAGCAGGGTCACGTCGTTGTTAAAGTTCTGGCTGTTGTAGTAGGGGTGGGTGATAGCCTGGAGATGCTTTTGACCTGGATCGGCTCAGCATTGGACTGACGATCGTGCTCTCCCAGGATCACATGGTGACGGccaggactggagagagagaaaaccgATTACAGTGTGTATGAATGAACCCAGCTCATCTGAGTGAAACTAAGAGGAATGTAATATGTACTTATGAACATGGTGCTAATAAAGCACTATGGAATTAAATGCACTTACGTGACACGGCAATGGGCAGCAGTGACAACCCAGTTCTGGCTGATTAGGGAGCCTCCACAGAAGTGGAATCCAGAGGCATcctgaaggagaaagggagaggtggaAGACAGTATATAGTATCGGTCTGACCATAATGTGAAGACAGTAGATAGATAGTATGGGTCTGACCATAATGTGAAGACAGTAGATAGATAGTATGGGTCTGACCATAATGTGAAGACAGTAGATAGATAGTATGGGTCTGACCATAATGTGAAGACAGTAGATAGATAGTATGGGTCTGACCATAATGTGAAGACAGCACTTCCcaacattttcaacatacattTACTCTTAAGTGGCTAACAAGAATTATCAGTGATTACAGCATTGTTGTGTGAAAAAACAATGTATAGAATGAAAGAGTGGAAATGGGGATACCTGAAGGGAGACTTGCCAGGGCCAGGAGCCAGATACGGCGTTCTGTCCGTTCACAATCTTCAAGCCGCTCACCTGCGGCGGGATGCTAGGCACTCCGCAACCTAGGGCACGAACACACAGTCTCAAACAACACCCTATCCTCATATATaatgcaccacttttgaccaaaGTCCTACATAGTTTTGATTAGCCTCAGAGTATGGACTGACATGCCTTCAGTAACTACCAAAGTATAATACAACACTTCACCTCCTTGTTGGCCAGGGCTTCTTTTAGCTATTCATCTCAACAGGACTTACCTATGTGAATAAATCAAGAATCAAAAAGATCAAATCAGTTCATATTATCAGACATTGACGATGACACCACTCACCCAGGGCTGAGGCCACCAAAGCGAGACAGCTGACGATCCAGAGCATGGCCATAGTGTAGTAGACTGTGCTTGACgtctctttgtccctctccctcttatACCCTGGCAGGCCCATCAGTCATGTCTCCCACTCACCCACAGGTTCCCCCAAGGTCTGATAGAGctgggaacaggtgggaaaatcTCACACCTCAGGGACAGTCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142867 lncRNA downstream 116 23252405 ~ 23252666 (-) True G123660
TU142850 lncRNA downstream 15893 23236354 ~ 23236889 (-) True G123647
TU142609 lncRNA downstream 20287 23230139 ~ 23232495 (-) True LOC110538290
TU142582 lncRNA downstream 81740 23170798 ~ 23171042 (-) True G123429
TU142524 lncRNA downstream 128709 23123784 ~ 23124073 (-) True LOC110538089
TU142870 lncRNA upstream 9049 23264303 ~ 23365923 (-) False G123662
TU142871 lncRNA upstream 9049 23264303 ~ 23365923 (-) True G123662
TU143045 lncRNA upstream 298945 23554199 ~ 23554769 (-) True G123821
TU143046 lncRNA upstream 299738 23554992 ~ 23555203 (-) True G123822
TU143089 lncRNA upstream 369448 23624702 ~ 23624901 (-) True G123859
XM_021625016.2 mRNA downstream 19014 23224489 ~ 23233768 (-) False LOC110538290
XM_021624911.2 mRNA downstream 51826 23176460 ~ 23200956 (-) True LOC110538224
XM_021624901.2 mRNA downstream 61453 23176460 ~ 23191329 (-) False LOC110538224
XM_036942638.1 mRNA downstream 123772 23119382 ~ 23129010 (-) False LOC110538089
XM_021625073.2 mRNA upstream 7209 23262463 ~ 23267059 (-) True LOC110538325
XM_021625104.2 mRNA upstream 20784 23276038 ~ 23278328 (-) False hspb6
XM_021625096.2 mRNA upstream 20784 23276038 ~ 23278785 (-) True hspb6
XM_021625116.2 mRNA upstream 23862 23279116 ~ 23281851 (-) False LOC110538355
XM_021624998.2 mRNA upstream 119625 23374879 ~ 23379764 (-) False igflr1
TU142589 other downstream 53530 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 246970 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 874622 22376153 ~ 22378160 (-) True G122972
TU141996 other downstream 1095248 22129614 ~ 22157534 (-) False LOC110537842
TU142857 other upstream 24925 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 648585 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 903913 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 1013972 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 1069326 24324580 ~ 24324836 (-) True G125043

Expression Profile