RNA id: TU144285


Basic Information

Item Value
RNA id TU144285
length 1165
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G124891
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24020798 ~ 24021962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTATTGCTCCTAGCCATATGTAAGCCTGGCAAACTAAGCTATACAGTTGCCTACACTAACCAACAGAAGGCAACACTGATAAACCAGGACACACCCCCATCCAAAGCAGGCCAATGGACTTTCGTGTGAGCAGACTTACTGGCATTGATGCTGTGTATCATAAATTGTGTTGTGGATAATTATGACAGTCTGGAAATCCTGGAGGGAGTCAAGTTAATAAATCAAGTTTTGGTTCTCCTTtttggttcaaatcaaatcaaattttattggtcacatacacatggttagcagatgttatttggagtgtagcgaaatgcttatgcttttagatctgacagtgcagcagtatctaacaggtaatatctaacaattccacaacaaaacctaatatctaacaaattccacaacaacacctaatacacacactcgtgtaaaggaatgggataagaatatatacactactgttcaaacatttggggtcacttagaaatgtccttgtttttgaaagaaaagcacatttttgtccattcaaATAACATACTGACTCCGACAGTACATCCAAatagagccatgtttccgtgaaacagagtatattacaatccctgatgtctctctggaaagcaacccttgcccaAATCTCGTAAACTTTTTTTAtctagggactggacattagcaagtaatatactcggaagagGTGGGTGGTGTGCGTGCACCCGAAGCCTCACTTGACATCCGCTCCGGCATCCTCTCCTCCGGctgcgttgttttgggtcggcctttggaatcagttcaaatgccctgggaagtgcagacaaaggatccgctttgggaaagtcgtattcctggtcgtggTGCTGATTGCGCTGGTAAGTTGAAGTCtgtctgatatccaatagttattCCCGGttgttttctgggctaacaatgtaagaaataatacataaaaaacaaaatactgcacagtttcctaaggactagaagcgaaaCTTCCATCTTTATCGACGCCATTTTGCAGGTCATGTGGCACTGTCTCAAAACAGTGGTTCATATAGTCCTGATTTCTCAGGCAGTATGTTATTTTCAAGAGATAATACAAATATCTGTAACATAACTCATTTAGATTTTGACCTAGGCCAGCAATACTCAATAGCCGGACTGTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144259 lncRNA downstream 1581 24018480 ~ 24019217 (-) True G124865
TU144264 lncRNA downstream 2395 24016906 ~ 24018403 (-) True G124870
TU144256 lncRNA downstream 4874 23950982 ~ 24015924 (-) False G124864
TU144287 lncRNA upstream 3017 24024979 ~ 24025288 (-) True G124893
TU144290 lncRNA upstream 4313 24026275 ~ 24026684 (-) True G124896
TU144295 lncRNA upstream 18965 24040927 ~ 24041258 (-) True G124901
TU144246 lncRNA upstream 50799 24072761 ~ 24074493 (-) False G124863
TU144249 lncRNA upstream 50799 24072761 ~ 24077096 (-) False G124863
XM_021625427.2 mRNA downstream 123246 23888015 ~ 23897552 (-) True LOC110538540
XM_021625209.2 mRNA downstream 412927 23559422 ~ 23607871 (-) False LOC110538403
XM_021625234.2 mRNA downstream 412927 23559422 ~ 23607871 (-) True LOC110538403
XM_021625225.2 mRNA downstream 412928 23559422 ~ 23607870 (-) False LOC110538403
XR_002475018.2 mRNA upstream 62481 24084443 ~ 24090618 (-) False LOC110533695
XR_005035947.1 mRNA upstream 62481 24084443 ~ 24091464 (-) True LOC110533695
XM_021625650.2 mRNA upstream 102992 24124954 ~ 24131365 (-) False LOC110538681
XM_021625658.2 mRNA upstream 102992 24124954 ~ 24131603 (-) False LOC110538681
XM_021625667.2 mRNA upstream 102992 24124954 ~ 24131603 (-) False LOC110538681
TU144219 other downstream 116121 23903839 ~ 23904677 (-) True G124840
TU142857 other downstream 739000 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 821546 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 1014986 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 1642638 22376153 ~ 22378160 (-) True G122972
TU144265 other upstream 137205 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 247264 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 302618 24324580 ~ 24324836 (-) True G125043
TU144590 other upstream 509700 24531662 ~ 24534529 (-) True LOC110538887
TU144748 other upstream 753258 24775220 ~ 24776627 (-) True G125305

Expression Profile