RNA id: TU144290


Basic Information

Item Value
RNA id TU144290
length 410
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G124896
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24026275 ~ 24026684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgtaagatactcaattaaagctacactcgttgtgaatccagccaacatgtcagcttttttaaatgcttttcggcaaaacCATAAGAAGcaattatctgatagcctgcaccatctgcaccagAGCTAGcttatttcaaccctgcaggcactacacaaaacgctgaaataaaatataaaacatgcattacctttgacgagcttcttttgttggcactccaatatgtcccataaacatcacaattggtccttttgtttgattaattccgtccatatatatccaaaatgttcaTTTATAAagcgcatttgatccagaaaaaaaaacagcttacaaaacgccacatcactacaaaatatttaaaaagttgcctataaactttgccaaaatatttcaaactacttttgtaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144287 lncRNA downstream 987 24024979 ~ 24025288 (-) True G124893
TU144285 lncRNA downstream 4313 24020798 ~ 24021962 (-) True G124891
TU144259 lncRNA downstream 7058 24018480 ~ 24019217 (-) True G124865
TU144264 lncRNA downstream 7872 24016906 ~ 24018403 (-) True G124870
TU144253 lncRNA downstream 10351 24001559 ~ 24015924 (-) False G124864
TU144295 lncRNA upstream 14243 24040927 ~ 24041258 (-) True G124901
TU144246 lncRNA upstream 46077 24072761 ~ 24074493 (-) False G124863
TU144249 lncRNA upstream 46077 24072761 ~ 24077096 (-) False G124863
TU144250 lncRNA upstream 46077 24072761 ~ 24077096 (-) False G124863
TU144245 lncRNA upstream 48662 24075346 ~ 24077096 (-) True G124863
XM_021625427.2 mRNA downstream 128723 23888015 ~ 23897552 (-) True LOC110538540
XM_021625209.2 mRNA downstream 418404 23559422 ~ 23607871 (-) False LOC110538403
XM_021625234.2 mRNA downstream 418404 23559422 ~ 23607871 (-) True LOC110538403
XM_021625225.2 mRNA downstream 418405 23559422 ~ 23607870 (-) False LOC110538403
XR_002475018.2 mRNA upstream 57759 24084443 ~ 24090618 (-) False LOC110533695
XR_005035947.1 mRNA upstream 57759 24084443 ~ 24091464 (-) True LOC110533695
XM_021625650.2 mRNA upstream 98270 24124954 ~ 24131365 (-) False LOC110538681
XM_021625658.2 mRNA upstream 98270 24124954 ~ 24131603 (-) False LOC110538681
XM_021625667.2 mRNA upstream 98270 24124954 ~ 24131603 (-) False LOC110538681
TU144219 other downstream 121598 23903839 ~ 23904677 (-) True G124840
TU142857 other downstream 744477 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 827023 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 1020463 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 1648115 22376153 ~ 22378160 (-) True G122972
TU144265 other upstream 132483 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 242542 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 297896 24324580 ~ 24324836 (-) True G125043
TU144590 other upstream 504978 24531662 ~ 24534529 (-) True LOC110538887
TU144748 other upstream 748536 24775220 ~ 24776627 (-) True G125305

Expression Profile