RNA id: TU144250


Basic Information

Item Value
RNA id TU144250
length 2609
lncRNA type antisense_over
GC content 0.40
exon number 5
gene id G124863
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24072761 ~ 24077096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccTGAAATGTCAACCtcttttggtgggatggagttggTCTGCTCTTGCTAAGAAaatttgttttcaattaaaaatggtcaaaaataaatcacagtaaggtacttaattgttacccagaaattatttgattgaGCTATAAAATGGCTACATTGAACCTTTAAAGCTCATTATGGTCATTCAGGCATCTACAATGTGCAGTAGTCTAGGCTACTGTCTAATATAGAAATGTACAACCATGCGATAATGACATTCCAAAATAATGGATGTTGTGGCATTTCATGTGAACAGTGTTGAATGCAGAAAATATACCGGTCATTTGGTTTACCTTATTGTGCTACAATATTTGCCACTAGATGTCTCCTGCGATTTCCGTTAGGGCATGATTAAATCACTTGCAATTGTGGACTAACAGAACTTTCAGAATGCATTTGCATGTTCTTGGAGAGTTGATACTTGATTGAGAAACTCAGTCCCATGGCCTTACACCCATTCAATTCTGTCAGATAACCTGGCTGAGAAGTCATCCAGTGCAACATGCATAACCAGATTGATATTGAATTTGCCAATCATGTTTGACTCCTGGTCCTAGGTCCCAACAAGGGTATGCAGACTTTTGTTCCAGCATAGTATTAAAACTGGCCTGGCTAAAGCATCAGCTATTTAAACTGTAGTTTAGGGATTAACATGTGTATGTTCAAATAATGCAAATGTGCATACAAAAGTCAAATCCTGTCATTAATGTAACAAACATCAACAAGCATCATCTTCATGTTCTGCATCCTGAATGCAGATGACGACTTATGTCATTGTGAGAGAACATGTTCTTATAACACTGGGCAAACAGGAAACATGAACAACAAGGCAAGACAGAGACATTTGTAAAGATTTATTACTTTTTTAGTTACAGTAGCTTGTCTTTCTCACTTGACTCTTAAACTAGAATTATTTTAACACCAATATTACATGGTAACAGCCAGTATGGAAACATCACAGCAATGTTCTGGGAACACATACTGTCAAGTCAAAAACGTCTCAGTGGGACTCTCATAAAGGAAAAAACAAATACTTGTACACACAGCCTACTACAGAGACTAAGTTGTGTTGTAGAGAGTGGTGGAGGGCTGGGGGTACTAGGGGTGTGACACTGGAGGGTGTGAGTGCATGTAAAAGGGGGGTGGGTCCCATTGCAGCTTTCTGGAGCCGGACAGTTACTCCTTAGAATGCATGTACAGCAACAGGTCAGCGACACGGTGGCTGTAGCCAAACTCATTGTCATACCAGGAAATGAGTTTGACAAAGTTGTCGTTGAGGGAGATGCCAGCGCCAGCATCAAAGATGGAGGAGTGGGTGTCGCCAATGAAGTCAGAAGACACAGAGTCCTCAGTGTATCCCAGGTATCCCTTCATGGGTCCTTCGGCGGCCTTCTTGACAGCCGCCTTGATCTCAGCGTAGCTGCCAGGCCGGGACAGGCGGCAGGTTAGGTCCACCACTGATACGTCAGCCACGGGCACACGGAAGGCCATGCCAGTCAGcttgctgacagagagagagaagacttaCATCAGCACTTGTATAATCAGTCTTTTTCATCACGCACACATCTGCATTCAGCATCTTTGATAAGTAGTAGGCACAATCACATAAATGTATGCAAACAcccatcacaggaggctgctgaggggaggacggctcataaatggctggaatggagtcaaccACATGGAAATCACATGTTTGATGTCATTCCAACCagcctcctgtgacacacacaccatctactgACCCGTTGAGCTCAGGGATGACCTTGCCCACAGCCTTGGCAGCTCCGGTGGAGGCAGGGATGATGTTCTGGTGGGCACCACGGCCATCGCGCCATGCCTTGGCAGAGGGGCCGTCCACCGTCTTTTGGGTGGCGGTGTAGGCGTGGACTGTGGTCtgaggaccagagagagaaaaagatgagCATGGTTTCCATAGCGTCAGCAGATGTGTCAATATGGACCACAGGAACAAGAGACATTCAGATGCTCCCTGCTCATGAAGATGCATGGACAGTCTAATGGAAGAAAAACACTGACCATGAGGGCCTCCTCGATGCCGAAGTTGTCGTGGATGACCTTAGCCAGGGGGGCCAGGCAGTTAGTCGTGCAAGATGCATTCTGACGATGGTCATGCTGGAGGGGTCGTACTTGTCCTCGTTGACTCCCATGACGAACATGGGGGCGTCAGGTGAGGGGGCGGACACAACCACCCGCTTGGCACCACCCTGGATGTGGGACTGtgaaaaAGAGGCCTTGTCAATGCTGAGGAAGACTCCGGTGGACTCAACGACGTAATCGGCACCGGCTTTACCCCATGGGATCTCATGGGGCTTCATACTAATGGGGAGAGAGatattaaggaaagctttgactatgtacagtcgtggccaaaagttttgagattgACAAATTCATTTCCActaagtttgctgcttcagtgtctttagatatttttgtcagattttACTagggaatactgaagtataattacaagcatttcatacgtgtcaaaggtttttattgacaattacatgaagttgatgcaaagagtcattatttgcagtgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144295 lncRNA downstream 31503 24040927 ~ 24041258 (-) True G124901
TU144290 lncRNA downstream 46077 24026275 ~ 24026684 (-) True G124896
TU144287 lncRNA downstream 47473 24024979 ~ 24025288 (-) True G124893
TU144285 lncRNA downstream 50799 24020798 ~ 24021962 (-) True G124891
TU144259 lncRNA downstream 53544 24018480 ~ 24019217 (-) True G124865
TU144309 lncRNA upstream 5350 24082446 ~ 24082771 (-) True G124912
TU144335 lncRNA upstream 33603 24110699 ~ 24111581 (-) True G124932
TU144339 lncRNA upstream 36578 24113674 ~ 24114494 (-) True G124936
TU144338 lncRNA upstream 42595 24119691 ~ 24120068 (-) True G124935
TU144263 lncRNA upstream 47852 24124948 ~ 24126239 (-) True LOC110538681
XM_021625427.2 mRNA downstream 175209 23888015 ~ 23897552 (-) True LOC110538540
XM_021625209.2 mRNA downstream 464890 23559422 ~ 23607871 (-) False LOC110538403
XM_021625234.2 mRNA downstream 464890 23559422 ~ 23607871 (-) True LOC110538403
XM_021625225.2 mRNA downstream 464891 23559422 ~ 23607870 (-) False LOC110538403
XR_002475018.2 mRNA upstream 7347 24084443 ~ 24090618 (-) False LOC110533695
XR_005035947.1 mRNA upstream 7347 24084443 ~ 24091464 (-) True LOC110533695
XM_021625650.2 mRNA upstream 47858 24124954 ~ 24131365 (-) False LOC110538681
XM_021625658.2 mRNA upstream 47858 24124954 ~ 24131603 (-) False LOC110538681
XM_021625667.2 mRNA upstream 47858 24124954 ~ 24131603 (-) False LOC110538681
TU144219 other downstream 168084 23903839 ~ 23904677 (-) True G124840
TU142857 other downstream 790963 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 873509 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 1066949 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 1694601 22376153 ~ 22378160 (-) True G122972
TU144265 other upstream 82071 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 192130 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 247484 24324580 ~ 24324836 (-) True G125043
TU144590 other upstream 454566 24531662 ~ 24534529 (-) True LOC110538887
TU144748 other upstream 698124 24775220 ~ 24776627 (-) True G125305

Expression Profile