RNA id: TU143372


Basic Information

Item Value
RNA id TU143372
length 1733
RNA type TUCP
GC content 0.54
exon number 1
gene id G124121
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24146861 ~ 24148593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGACGGTGTAACTACTTCCCAACACAATGACAGTCACCACCTTGGCGTAAGAGACTCTGGTGCTGCCCCTGTTGTTGTTCTCCAGAGTCACCTCAAAGCTCTCCAGATCGGGATCTTTGGAGCAGACCCCCGCCAGCTTGTAGATACAGTTTCCCTGGAAGTCGAAGCGCTTCCCATCAAAGGTGCGGAAGTGGGGGTCCCCCTGTGCTGAGCAGGTCTTGAAGCTGAGGGGGTAGCAGTCCTGAACCCCGTTGACCACTTCACAGTGCTCACTAGCCTTGCACTTCCTAGGCATACACACCAACTTCTGTGTGGCTCCGTCGCACACACACTTACTCTGACATGTGTTGCCCTCCCAAAAGGTTTCTTCAGGCAGGTAGTAATGGTCATTGTGTGTACAGCCACACCCTGTCTCCTTGATGACACAGTGTTCACCACTGAGCACGTAACCCATGTCGCACTGGCAGCCTTCCACACagactttggaacagatttcggGGACATTGGGAATGGCACAGGTGGCAGGGCAGGCAGTGCCACATAGCTCATAGTGGCTGTGGTATGGGCAAGCCAGGGCTGTTTGAGTTGAGAAAAAACAAACATCAAATGTAGTCCTAATACATTCTGCAAATTCATTTGACACATTATACACATTTCAGAATGTCTGAGTTCATAAATGTGATGTTTTGTTTTAGCTGAGAACTTACGGCAGTCGGAGGCCTTTCTCCACAGCGGTGAGACTACAACCCCAGCCTGCTGACATTTGGCCACGTAGTTAGCCAAGGTCTCACACAACACTTCCTGTCGACCCTCATTCAGACACACATCATAGAGGCAGTCTGAGGCAAACTCCTTCACTGGCACTTTCTTATGACACTGGTGAAATGGGCCCCTTCCGTCTGTCATCAAACCACAGTACTTTGGTCCAGTATAAAGTGCCCGGTCTGTTTCTGAGCACGTGGGGCAGTTGCCATTACAGACATGCCGGCAGAATGGATCACCGTCAGCAACACTCCAGGATGCCACCCACGCCGTGGTATTTGCCGAAAGCACACCTGTGGGAGTGGTGAAGTCGTCTGTTTTGTTACCATTGTAGTTGCCACAAATGCCACCGAGGTTGTCGTAGTAACTGCTGCTGATGGTCACCATGAAGAAGGCGGTCCAGTCAAAAGTGATCTTCAAGCCAACATCTGTCTGGATGGTCCCTTGGATACCAGACTCTGTGATTCTGATGCTGTCAGACTCCAAACTCACAGGGAGGTCAGACCTAATGCCATCAATctgagacaagagagagagaagaggaattaAAGAGGACTTAAAGTGGATGGAGAGCATAGAGGATTCTTACATTCAACTTCAACATGGAAAATCTGAATCAAGTATAACTGGAAGCCACCCACCTCCACTGTCCCTCTTTGGCCACTGAGAATGGTGATCCTGTGACCACTCAGGTCTATGTTGGCTGATTTGAGGAAGGAGCCCTTGGAGTTGACTCGCGGCTCATTCTTAGTCTGGATGCTGAACTGAGGCAGGGAGGGATCTTTGCCCGTTGTATTCACCAGAATGTAGGAGCAGGTACCCATGAAGGAGAAGGGCTGGCCATCGAACGTGCTATAGTGAGGGTCACCGAACAACCAGCAGTAGGCCTTGGACTGGGCCACACATATCGCCTTATTGTTCATCACCACACAGTTTTCTTTCTCACGGCACTCAGTGTCCTCACAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143373 lncRNA upstream 139 24146066 ~ 24146722 (+) True G124122
TU143370 lncRNA upstream 16905 24129598 ~ 24129956 (+) True G124119
TU143366 lncRNA upstream 29405 24117232 ~ 24117456 (+) True G124115
TU143364 lncRNA upstream 31203 24115447 ~ 24115658 (+) True G124113
TU143337 lncRNA upstream 90741 24055823 ~ 24056120 (+) True G124087
TU143375 lncRNA downstream 500 24149093 ~ 24154800 (+) False G124124
TU143376 lncRNA downstream 500 24149093 ~ 24154800 (+) True G124124
TU143384 lncRNA downstream 13972 24162565 ~ 24162813 (+) True G124130
TU143386 lncRNA downstream 15102 24163695 ~ 24163901 (+) True G124132
TU143393 lncRNA downstream 23577 24172170 ~ 24172474 (+) True G124139
XM_021625630.2 mRNA upstream 22047 24106644 ~ 24124814 (+) False LOC110538661
XM_036943136.1 mRNA upstream 22047 24106645 ~ 24124814 (+) True LOC110538661
XM_021625604.2 mRNA upstream 65846 24077675 ~ 24081015 (+) False tmem147
XM_021625614.2 mRNA upstream 65846 24077742 ~ 24081015 (+) False tmem147
XM_036943064.1 mRNA upstream 65846 24078086 ~ 24081015 (+) True tmem147
XM_021625689.2 mRNA downstream 42297 24190890 ~ 24200234 (+) False LOC110538727
XM_021625704.2 mRNA downstream 42328 24190921 ~ 24200234 (+) False LOC110538727
XM_036943161.1 mRNA downstream 42348 24190941 ~ 24200234 (+) False LOC110538727
XM_021625697.2 mRNA downstream 42488 24191081 ~ 24200234 (+) True LOC110538727
XM_036943107.1 mRNA downstream 52506 24201099 ~ 24238678 (+) False LOC110538747
TU143245 other upstream 265225 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other upstream 265225 23861917 ~ 23881636 (+) True LOC110538497
TU143220 other upstream 321359 23824693 ~ 23825502 (+) True G123980
TU141439 other upstream 1335598 22810767 ~ 22811263 (+) True G122459
TU141081 other upstream 1796925 22348583 ~ 22349936 (+) True apoc4
TU143399 other downstream 392411 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other downstream 392411 24541004 ~ 24543611 (+) True LOC110538915
TU143765 other downstream 724458 24873051 ~ 24873834 (+) True G124451
TU144043 other downstream 1228891 25377484 ~ 25382312 (+) True LOC110534557
TU145423 other downstream 1534287 25682880 ~ 25757853 (+) True G125934

Expression Profile