RNA id: TU143375



Basic Information


Item Value
RNA id TU143375
length 981
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G124124
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24149093 ~ 24154800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAGTTTATTTGTCGATACACAATTAACCAGTGATCACCTTGTAATAGTGTGCATCAACCACACAGCCACAGTTCTCCAGTAGGACACACTTGCCACCATCAAACACAAAGCCGTCGTCACACTGGCAGCCCTCCTGGCATAGTGGGCATTTTGGAGACTCGCTGAGAGAGTAACAGGTAGAAGAACAGGTGTCGGCACACAACTCATAGTGACTGTTAGCTGGACACGTCAGAGCTAGAAGACAGATGGAAATGGGAGGAGATGCATGTTATCAAAAAAATTAAATCAGCTTCAGCTTCAAATGTTTTTCAGCAGAGCATTAGGTCAGAAAAATATTGCACACTAAGATAAACCAGGATAAGGTAAATTAACTTCAAATATCAAAATTCACTCACAACAAAACTGGTCAGATCTCCAGCTGCTGACAAGGCCACCGGATACCTGACAGAAAGTCACATATGTCTGTAAGTGGCGGCACAGGGcatccccaccctctccctccttcatgCACTCCTCAAAGTGCTCTTGTGGTGGCACAACAGCATGGCATTGGGCAAATGGACCCTTGGTTGACTTCATGATGCTACAAGCCGGTGGGGGTCCACTGGTGGGAGGACACTTCAAGCCACCGTCACATCCTGTCTGACATTTGACCCCTTCCTGAACCACCAACCACCCCGCTGCAAACTTCTCCACAGACGGCTCCTGCAGCCCACTGGGCAGCAGGAAGTCATCCTCCTTCTTGTCATTATAGTTGCCACAGAGACCACCGGTAACACCTTTGTAAGTGGATGGTAGCTGTATGATGGCGCCAGCAACGGTGTCGTAGGTCACCATCAAGCCAAAGTCTGTTACCACGACGATGTTAATGCCGTTCTGGTAGGCCCTGACCTTTCCATCTCCGAGTGACAGTGGGAGATTTGCTGTAACGTCATCCACCTGTGAAAGGAGAAAAGATTGAAAACATCAGTTTTTCTAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143373 lncRNA upstream 2371 24146066 ~ 24146722 (+) True G124122
TU143370 lncRNA upstream 19137 24129598 ~ 24129956 (+) True G124119
TU143366 lncRNA upstream 31637 24117232 ~ 24117456 (+) True G124115
TU143364 lncRNA upstream 33435 24115447 ~ 24115658 (+) True G124113
TU143337 lncRNA upstream 92973 24055823 ~ 24056120 (+) True G124087
TU143384 lncRNA downstream 7765 24162565 ~ 24162813 (+) True G124130
TU143386 lncRNA downstream 8895 24163695 ~ 24163901 (+) True G124132
TU143393 lncRNA downstream 17370 24172170 ~ 24172474 (+) True G124139
TU143368 lncRNA downstream 22046 24176846 ~ 24177151 (+) True G124117
TU143369 lncRNA downstream 22490 24177290 ~ 24177694 (+) True G124118
XM_021625630.2 mRNA upstream 24279 24106644 ~ 24124814 (+) False LOC110538661
XM_036943136.1 mRNA upstream 24279 24106645 ~ 24124814 (+) True LOC110538661
XM_021625604.2 mRNA upstream 68078 24077675 ~ 24081015 (+) False tmem147
XM_021625689.2 mRNA downstream 36090 24190890 ~ 24200234 (+) False LOC110538727
XM_021625704.2 mRNA downstream 36121 24190921 ~ 24200234 (+) False LOC110538727
XM_036943161.1 mRNA downstream 36141 24190941 ~ 24200234 (+) False LOC110538727
XM_021625697.2 mRNA downstream 36281 24191081 ~ 24200234 (+) True LOC110538727
XM_036943107.1 mRNA downstream 46299 24201099 ~ 24238678 (+) False LOC110538747
TU143372 other upstream 500 24146861 ~ 24148593 (+) True G124121
TU143245 other upstream 267457 23861917 ~ 23881636 (+) False LOC110538497
TU143247 other upstream 267457 23861917 ~ 23881636 (+) True LOC110538497
TU143220 other upstream 323591 23824693 ~ 23825502 (+) True G123980
TU141439 other upstream 1337830 22810767 ~ 22811263 (+) True G122459
TU143399 other downstream 386204 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other downstream 386204 24541004 ~ 24543611 (+) True LOC110538915
TU143765 other downstream 718251 24873051 ~ 24873834 (+) True G124451
TU144043 other downstream 1222684 25377484 ~ 25382312 (+) True LOC110534557
TU145423 other downstream 1528080 25682880 ~ 25757853 (+) True G125934

Expression Profile