RNA id: TCONS_00028228


Basic Information

Item Value
RNA id TCONS_00028228
length 2808
RNA type mRNA
GC content 0.51
exon number 19
gene id XLOC_014177
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34311374 ~ 34679738 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTCCGTCCCGGAGGGACTGCAGATGTGACATGATCTTTCTGTCGGGATGCCTACTCTTGTCCGTCTTGGGATTTCAACCTGCATTGGCGAAGGTTTGCAACGATTACACAAGGCACGGCCTGGACAACAACTGGTACGCGAGGGATGGTGAGAAGTTGCCTATCATGGTCCTGATGCCGATGAATGAATCAGCGCTGATGAGCAGCATCAGTCAGGGCATCGAACCGGCCGTTCAGCTGGCCATTCAGCACATCCGCGAGTCCAGGCAGTACTCCTTCTCACTCATCACCAAAATCTACGACACAGAGTGTGACAATGCAAAGGGATTGCGGGCCTTCTTTGATGCAATCTGCTACGGTCCGAAACATTTGATGATCTTTGGAGGAGTGTGTCCATCAGTGACTTCAATCATCGCTGAATCGTTGGAAGGGTGGAACCTCGTGCAGctttcttttgcGGCCACTACTCCTGTACTGGCAGACAGAAAAAAGTATCCAAATTTCTTCAGGACGGTCCCCTCAGACAACGCTGTGAATCCTGCTGTGGTGAAGTTTCTCAATTTTTACAACTGGAGCCGGGTGGGAACCCTGACACAGGACGTCCAACGCTTTTCCGAGGTGCGAAATGATTTGACCAATGAGCTGGAGAAGGCAGACATCCAGATTGCAGACACAGAGAGTTTCTCTAACGATCCCTGTGTGAATGTGAAGAAACTGAAGGATAATGACGTTCGAATCATCATCGGTCAGTTTGATGAGAATCTGGCTGCTAAAGTCTTCTGCTGTGCCTACAACCTTAACATGTATGGCAGCAAGTACCAGTGGATCATCCCGGGATGGTACCAGGGGAACTGGTGGGAGCAGGCCAACTCTACAAACTGCACCACGAGGAAGCTGCTGACAGCCATGGAGGGCTACATCAGTGTGGACTTCGAGCCCCTCAGTGCCAAACAGATTAAGGGAATATCAGGAAGAACGCCGCAGGAGTATGAGAGGGAGTACAATCGAGAGCGAGATCAAAAGGGAGTCGAGACCAGCAAATTCCACGGCTTTGCATATGATGGCATCTGGGTGATCGCTAAAACACTCACGCGTGTCATGGAGCTCCTGAGACACAAGGAGAGGCACGACATGTACCACAACTTCACAGTGGACGACCGAGAGGTGGGAAAGATGGTCCTCGATGTGATGAATGAAACCAACTTCTTTGGAGTGACGggtCAGGTGATGTTCAGGAATGGGGAACGCATGGGAACCATAAAATTCACCCAGTTTCAAGAGGGTCAGGAGGTGAAGGTGGGCGAGTACAACGCCATTGCGGATGTACTGGACCTTATCAACAACACCATCAGGTTTCAAGGTGTCGAACCGCCGAAGGATCGGACATTTGTGCGTCTGCAGCGTCGGCAAATTAACGTCCCGCTCTACAGCATCTTGTCTACCATCACGATCCTGGGCATGCTGATGGGTGGCGCTTTTCTCTTCTTCAACATCAAAAACCGCAACCACAGGCTGATCAAAATGTCGAGTCCCTATATGAACAACCTGATCATTCTGGGTGGCATGCTGTCCTACGCCTCCATCTTCCTCTTCGGGCTGGACGGATCTTTTGTGTCAGACAAGGAGTTTGAAACCCTCTGCACTGTCCGTACATGGATCCTCATTGTGGGGTACACAACAGCGTTTGGTGCCATGTTTGCGAAGACCTGGAGAGTCCATGCCATCTTCAAGAATGTAAAGATGAAGAAGAAGATTATCAAGGACCAGAAGCTCTTTATCATCGTGGGAGGGATGTTGCTGATTGATTTGTGCATCCTCATATGCTGGCAGATCGTGGATCCCCTGAAGAGAACTGTGGAAGAGTACAGCTTGGAGGCGGATCCTCAGGGACGAGACATCGCAATCCGGCCTTTCCTGGAGCACTGCGAGAACACACACATGACCATTTGGCTGGGAATTGTCTATGCCTACAAAGGCCTCCTTATGTTGTTCGGATGTTTCTTGGCCTGGGAGACGAGAAACGTGAGCATCCCAGCACTGAACGACAGCAAGTACATCGGTATGAGTGTGTACAATGTGGGCATCATGTGCATCATCGGGGCAGCGGTGTCCTTCCTGACTCGGGATCAGCCTAATGTTCAGTTCTGCATTGTGGCCCTGGTCATCATTTTCTGCAGCACCATCACGCTGTGTCTGGTATTTGTGCCAAAATTTGTTACAATGCGAACAAACCCGGATGCTGCTACACAAAACCGGAGGTTGAAGTTCACCCAGAACCAGAAGAAGGAAGATTCCAAGACATCCACCTCAGTGACCAGTGTTAACCAAGCCAACACTTCACGTCTGGATGGACTACAGTCAGACAATCATCGCCTTCGAATGAAAATTACAGAGCTGGATAAAGAACTGGAAGAGGTTACCATGCAACTCCAGGACACTCCAGAAAAGACTCCATACATTAAACAAAACCACTACCAAGATGCCAACAATATCCTGAGCATACGCAACTTCACTGACGGCAAAGATGGAGAGAAGTCTCTGAAGAACCACCTAGAGCAGAAACCCCAGGCTCAGTGGGGATCCGCGGATCCTTCTAGGATAAGTAGAGGTCCACTAGAAGACATCAACTCACCAGAACACATACAGCGCCGGCTATCCTTGCAGCTGCCAATCCTGCATCATGCCTATCTACCCTCCATAGGAGGTGTGGACGCAAGTTGCAGCAGTCCCACAAGCAGCCCATCCTCCAGTCCCCGCCACAGACACATGCCTCCCTCCTACAGGGTCATGGTGTCCGGCCTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007214 gamma-aminobutyric acid signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0038039 G protein-coupled receptor heterodimeric complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-620 Predicted to enable G protein-coupled GABA receptor activity. Predicted to be involved in gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of G protein-coupled receptor heterodimeric complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 59 and nicotine dependence. Orthologous to human GABBR2 (gamma-aminobutyric acid type B receptor subunit 2).

Ensembl:

ensembl_id ENSDART00000086617

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029976 lncRNA upstream 29396 34280764 ~ 34281978 (+) True XLOC_014176
TCONS_00029975 lncRNA upstream 512964 33795748 ~ 33798410 (+) True XLOC_014169
TCONS_00029973 lncRNA upstream 621014 33553634 ~ 33690360 (+) False XLOC_014168
TCONS_00029974 lncRNA upstream 621014 33574314 ~ 33690360 (+) False XLOC_014168
TCONS_00029972 lncRNA upstream 650438 33553613 ~ 33660936 (+) False XLOC_014168
TCONS_00029977 lncRNA downstream 21939 34701677 ~ 34738365 (+) True XLOC_014178
TCONS_00029978 lncRNA downstream 69300 34749038 ~ 34751777 (+) True XLOC_014180
TCONS_00029979 lncRNA downstream 207837 34887575 ~ 34914799 (+) True XLOC_014181
TCONS_00029980 lncRNA downstream 681742 35361480 ~ 35363590 (+) True XLOC_014185
TCONS_00028236 lncRNA downstream 688864 35368602 ~ 35369837 (+) True XLOC_014186
TCONS_00028227 mRNA upstream 32201 34274504 ~ 34279173 (+) True XLOC_014175
TCONS_00028226 mRNA upstream 51708 34230108 ~ 34259666 (+) True XLOC_014174
TCONS_00028223 mRNA upstream 93218 34169055 ~ 34218156 (+) False XLOC_014172
TCONS_00028224 mRNA upstream 94010 34180327 ~ 34217364 (+) True XLOC_014172
TCONS_00028222 mRNA upstream 94012 34169055 ~ 34217362 (+) False XLOC_014172
TCONS_00028230 mRNA downstream 62968 34742706 ~ 34746878 (+) True XLOC_014179
TCONS_00028231 mRNA downstream 270462 34950200 ~ 34958185 (+) False XLOC_014182
TCONS_00028232 mRNA downstream 272844 34952582 ~ 34957888 (+) True XLOC_014182
TCONS_00028233 mRNA downstream 322741 35002479 ~ 35004947 (+) True XLOC_014183
TCONS_00028234 mRNA downstream 333391 35013129 ~ 35017047 (+) False XLOC_014184
TCONS_00028225 other upstream 104094 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028221 other upstream 175679 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028217 other upstream 545649 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028194 other upstream 1492800 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028183 other upstream 2252775 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028229 other downstream 62968 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028237 other downstream 1099104 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028239 other downstream 1523340 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028240 other downstream 1563053 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028243 other downstream 2000353 36680091 ~ 36680207 (+) True XLOC_014197

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_05990266_06191955.mRNA True 2850 mRNA 0.51 19 CI01000054 5990266 ~ 6191955 (-)
bowfin (Amia calva) AMCG00021705 True 933 mRNA 0.52 6 CM030130.1 26417306 ~ 26432305 (+)