RNA id: TU144469


Basic Information

Item Value
RNA id TU144469
length 296
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G125056
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24334531 ~ 24334826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgaacatcccacggagtaccattaaatccattattttaataaatggaaagaatatggcgcCCACCAAAATTCACGGAAAGGAGGGCAttgatcagagaggcaacaaggGACCAAAAATAAACCTGAagaagctgcaaagctccacagcggagattggagtatctgtccataagaccactttaagccgtacactccacagagctgggctttacagaagagtggccagaaaaaagacattgttaaagaaaaaaaataaacacgtttggtgttcgccaaaaggcgtGCGTTAACGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144466 lncRNA downstream 1839 24332411 ~ 24332692 (-) True G125053
TU144461 lncRNA downstream 5181 24329095 ~ 24329350 (-) True G125048
TU144460 lncRNA downstream 5773 24328481 ~ 24328758 (-) True G125047
TU144459 lncRNA downstream 6340 24327983 ~ 24328191 (-) True G125046
TU144454 lncRNA downstream 11293 24322964 ~ 24323238 (-) True G125041
TU144510 lncRNA upstream 36860 24371686 ~ 24371907 (-) True G125095
TU144513 lncRNA upstream 43634 24378460 ~ 24378678 (-) True G125098
TU144492 lncRNA upstream 46580 24381406 ~ 24382911 (-) True G125078
TU144497 lncRNA upstream 60029 24394855 ~ 24413084 (-) False G125083
TU144516 lncRNA upstream 69587 24404413 ~ 24409804 (-) True G125101
XM_021625736.2 mRNA downstream 81430 24249862 ~ 24253101 (-) True LOC110538767
XM_021625679.2 mRNA downstream 150359 24178523 ~ 24184172 (-) False LOC110538717
XM_036943182.1 mRNA downstream 150359 24178523 ~ 24184172 (-) True LOC110538717
XM_036962226.1 mRNA downstream 161695 24144519 ~ 24172836 (-) False LOC110538705
XR_005035960.1 mRNA downstream 194863 24138846 ~ 24139668 (-) True LOC118938710
XM_036943239.1 mRNA upstream 145439 24480265 ~ 24492482 (-) False LOC110538859
XR_005035966.1 mRNA upstream 145439 24480265 ~ 24492482 (-) True LOC110538859
NM_001160485.1 mRNA upstream 168980 24503806 ~ 24504593 (-) True LOC100301652
XM_021625867.2 mRNA upstream 196598 24531424 ~ 24540898 (-) False LOC110538887
XR_005035978.1 mRNA upstream 196598 24531424 ~ 24540898 (-) False LOC110538887
TU144456 other downstream 9695 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 64395 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 173088 24159167 ~ 24161443 (-) True LOC110538705
TU144219 other downstream 429854 23903839 ~ 23904677 (-) True G124840
TU142857 other downstream 1052733 23280179 ~ 23281798 (-) True LOC110538355
TU144590 other upstream 196836 24531662 ~ 24534529 (-) True LOC110538887
TU144748 other upstream 440394 24775220 ~ 24776627 (-) True G125305
TU146650 other upstream 2226788 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 2316550 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 2936434 27271260 ~ 27278124 (-) True LOC110485245

Expression Profile