RNA id: TCONS_00029978


Basic Information

Item Value
RNA id TCONS_00029978
length 1763
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_014180
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34749038 ~ 34751777 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTAGactttgttttctgatttaacAATCATTCAAATGGTCCAACACTAATACAATGGGAAGTCATAGCTGCACAATCATCTCTAAAGCTTATGGTTTATTAATCAGAGAAACAGGATCAACTAGAATTAATGTGTGAATGGAAACCCATTGCTGAAGAGCCTTTTTATCTGCGTCCTACTAAAATGTTGCTCTTCGATGCACTACAGCCTAAACTATTGATTGACTGTACATACCGTCTTCACTCTAACCTTTTAGGTTAATGTACCAAAGTCTTACATTGTTAGGACAGAAGTAAAAATACAAATCACAGTGACCTACAAGGCAGTCAATACTATTACAAGGCTGTCGCTCCTATGACAATACACTTATTTAGAAAGTTTCCCAAAAATGACACTTCGCattgtttcaaacctgtatggTCTTCAGCATTGACTCTTATggtgtggagaaaaaaaaaaaagtttttaaaatatcgtcttttgtgtttGTCAGAATAAATACAGACCTGGAACAACATGAGTGTGAATAAATTATTAGGTAAACTCTCTCTTTAACGGAACACtctacttttttggggagtaggCCAATTTTATTAGTCTCCTAGAGGAAAACAGTTGGGTTTACCACTTTTTAATCCATTAAGCCAATCTCTGGTCTAGCTGgggtacttttagcttagcataaataattgaatcggattagaccattagcatcatgcTCAAATTTTTCCATAAATAAGCTTGATTCTAATGTAGTTACTTTATGTACAAAAAACTTTCTTGATTATGACATCATAATgggagtatagttcctagccatatcggaATAGAAATCAggaacttttcattttccattggtCTTCGTACATGATGTAATTACATTAGaataaagctttaaatagaaaaatgaccaaaactctttcctgacAtctttgagcaagatgctaacggtctaatccaattcaatgatttatgctaagctaagctaaaatttctccagttgaatggattcaaaaatgataaaactcaactgATTAACTCTAGGGGACTTAAAATGAGTCTTTTTTAAAAAGGAGTGTCCTTTAAAAGAAACCGCCTTTTTCATGAACATCCTTCAGAAATTCCTTTTTAGAAAACAACATATCTTCCTGTAAACTCTCAAACGGAACATCAAGATGCCTATTTTCTCATCATAGTATCCAAAAAATACCGGATTTGTGTCTTACAGTCTTAAGCGACTGCCCTTGTATTGAGATCAGTGTAGGAAGATGATTAAAACTGGACATATTTGGCATCAACTTGTACATGAGGCAGTTATGTTAAATACAGTGTGcagagtgttttgtttttttgcattaaaacttATCATGTACACCTCAACGTTGGCTAATCACGAAAAACATTGTTGAATATTGTTTCGGTTAAAACCGTAGCTTATTTACCAGCCATTAAACTCGAAATAATGACTTGAACACATGcaataaagttttgttttgctttttcttcGATATATCTCTTTTTTTGGTATTTGGAATGAGGCTGGCAATGCTAACGCTACCGTACACCACAAAGCGAATGGGCAGAAGCACAAAGAATGGCACGTTGTGAGCGAGTGCACCGCCATGCACTTTGTGTACAAGAACAGACAGGAGCGCCTTTGGTTTTGGGAGTTATTTGCTCTCCAGGAATGTGAGATTGGCCATGTGCTGCTCCAGGGATTTGACCCCAAATCCGTTGGAGCCTTTGCCGTTGAGAGTTTCC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0009611 response to wounding biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0048589 developmental growth biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042246 tissue regeneration biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0031099 regeneration biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0040007 growth biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042060 wound healing biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029977 lncRNA upstream 10673 34701677 ~ 34738365 (+) True XLOC_014178
TCONS_00029976 lncRNA upstream 467060 34280764 ~ 34281978 (+) True XLOC_014176
TCONS_00029975 lncRNA upstream 950628 33795748 ~ 33798410 (+) True XLOC_014169
TCONS_00029973 lncRNA upstream 1058678 33553634 ~ 33690360 (+) False XLOC_014168
TCONS_00029974 lncRNA upstream 1058678 33574314 ~ 33690360 (+) False XLOC_014168
TCONS_00029979 lncRNA downstream 135798 34887575 ~ 34914799 (+) True XLOC_014181
TCONS_00029980 lncRNA downstream 609703 35361480 ~ 35363590 (+) True XLOC_014185
TCONS_00028236 lncRNA downstream 616825 35368602 ~ 35369837 (+) True XLOC_014186
TCONS_00029981 lncRNA downstream 621756 35373533 ~ 35378466 (+) False XLOC_014187
TCONS_00029985 lncRNA downstream 621756 35373533 ~ 35379985 (+) False XLOC_014187
TCONS_00028230 mRNA upstream 2160 34742706 ~ 34746878 (+) True XLOC_014179
TCONS_00028228 mRNA upstream 69300 34311374 ~ 34679738 (+) True XLOC_014177
TCONS_00028227 mRNA upstream 469865 34274504 ~ 34279173 (+) True XLOC_014175
TCONS_00028226 mRNA upstream 489372 34230108 ~ 34259666 (+) True XLOC_014174
TCONS_00028223 mRNA upstream 530882 34169055 ~ 34218156 (+) False XLOC_014172
TCONS_00028231 mRNA downstream 198423 34950200 ~ 34958185 (+) False XLOC_014182
TCONS_00028232 mRNA downstream 200805 34952582 ~ 34957888 (+) True XLOC_014182
TCONS_00028233 mRNA downstream 250702 35002479 ~ 35004947 (+) True XLOC_014183
TCONS_00028234 mRNA downstream 261352 35013129 ~ 35017047 (+) False XLOC_014184
TCONS_00028235 mRNA downstream 261435 35013212 ~ 35016295 (+) True XLOC_014184
TCONS_00028229 other upstream 2305 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028225 other upstream 541758 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028221 other upstream 613343 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028217 other upstream 983313 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028194 other upstream 1930464 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028237 other downstream 1027065 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028239 other downstream 1451301 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028240 other downstream 1491014 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028243 other downstream 1928314 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028250 other downstream 2917883 37669660 ~ 37669774 (+) True XLOC_014206

Expression Profile

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