RNA id: TCONS_00028232


Basic Information

Item Value
RNA id TCONS_00028232
length 928
RNA type mRNA
GC content 0.52
exon number 4
gene id XLOC_014182
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34950200 ~ 34958185 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTGAAGAACCCATCACCCCGCAGCCCTATAATCGCAGCCAGTACTGCCAATGGCCCTGCAAATGCCCCAAAACTCCTCCCATGTGCCCGCCAGGTGTCAGTCTGCTTATGGATGGCTGCGATTGCTGCAGAGCCTGTGCCAAACAGGTCAGGGAGGCTTGCAATGAGAAAGAAAACTGTGACCATCATCGCGGCCTTTACTGTGATTACAGTGCAGACAAGCCTAGGTACGAAAAAGGAGTATGTGCGTTTCTGCCAGGCACTGGCTGTGAGCACAATGGTGTGATTTATCGCAATGGACAGAGCTTTCAGCCCAACTGCAAATATCAGTGTCTTTGTGTGAACGGGGCGATCGGGTGTGTGCCGTTGTGCAATGAGTCTCAGCCGCCCAGGGTTTGGTGCCAGAACCCGCAGAGGGTTAAAGTCCACGGCCAATGCTCTCTGTCCAGCGTGAAGAAGAACTGGCATAAGAACTGTGTGGCCCAGACAACCTCTTGGAGTCCCTGCTCGAAGACCTGCGGTCGTGGCGTCTCTTTACGaatcaccaacaacaacaaaaagtgtgAGATGGTCAACGAGAGCAGACTCTGCAACATCCGGCCCTGCAATGTGGATATCACGAAACACATCAAGCCTGGAAAGAAGTGCTTGAACATCTACAGAGCAGAGAAGCCTCAAAACTTCACCATCTCAGGCTGCACCAGCACAAACACCTACCGGCCCAAGTACTGTGGAGTGTGTACAGACGAGCGCTGCTGCATCCCCTACAAATCCAAAACTATTGAAGTCGACTTCCAGTGCCCGAACGGCCCCGGATTCACCTGGCAGGTCATGTGGATCAATGCCTGCTTCTGCAACCTGAGTTGTAAGAACCCTAATGACATATTTACTGATCTAGAACAGTACCATGAGAAGCGGGAGATCTGA

Function

GO:

id name namespace
GO:0060548 negative regulation of cell death biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0005178 integrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-178 Predicted to enable heparin binding activity and integrin binding activity. Predicted to be involved in cell adhesion; negative regulation of cell death; and signal transduction. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human CCN4 (cellular communication network factor 4).

Ensembl:

ensembl_id ENSDART00000147714

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029979 lncRNA upstream 37783 34887575 ~ 34914799 (+) True XLOC_014181
TCONS_00029978 lncRNA upstream 200805 34749038 ~ 34751777 (+) True XLOC_014180
TCONS_00029977 lncRNA upstream 214217 34701677 ~ 34738365 (+) True XLOC_014178
TCONS_00029976 lncRNA upstream 670604 34280764 ~ 34281978 (+) True XLOC_014176
TCONS_00029975 lncRNA upstream 1154172 33795748 ~ 33798410 (+) True XLOC_014169
TCONS_00029980 lncRNA downstream 403592 35361480 ~ 35363590 (+) True XLOC_014185
TCONS_00028236 lncRNA downstream 410714 35368602 ~ 35369837 (+) True XLOC_014186
TCONS_00029981 lncRNA downstream 415645 35373533 ~ 35378466 (+) False XLOC_014187
TCONS_00029985 lncRNA downstream 415645 35373533 ~ 35379985 (+) False XLOC_014187
TCONS_00029987 lncRNA downstream 415645 35373533 ~ 35379985 (+) False XLOC_014187
TCONS_00028230 mRNA upstream 205704 34742706 ~ 34746878 (+) True XLOC_014179
TCONS_00028228 mRNA upstream 272844 34311374 ~ 34679738 (+) True XLOC_014177
TCONS_00028227 mRNA upstream 673409 34274504 ~ 34279173 (+) True XLOC_014175
TCONS_00028226 mRNA upstream 692916 34230108 ~ 34259666 (+) True XLOC_014174
TCONS_00028224 mRNA upstream 735218 34180327 ~ 34217364 (+) True XLOC_014172
TCONS_00028233 mRNA downstream 44591 35002479 ~ 35004947 (+) True XLOC_014183
TCONS_00028234 mRNA downstream 55241 35013129 ~ 35017047 (+) False XLOC_014184
TCONS_00028235 mRNA downstream 55324 35013212 ~ 35016295 (+) True XLOC_014184
TCONS_00028238 mRNA downstream 841496 35799384 ~ 35852390 (+) True XLOC_014190
TCONS_00028244 mRNA downstream 2160659 37118547 ~ 37119891 (+) True XLOC_014198
TCONS_00028229 other upstream 205849 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028225 other upstream 745302 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028221 other upstream 816887 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028217 other upstream 1186857 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028194 other upstream 2134008 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028237 other downstream 820954 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028239 other downstream 1245190 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028240 other downstream 1284903 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028243 other downstream 1722203 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028250 other downstream 2711772 37669660 ~ 37669774 (+) True XLOC_014206

Expression Profile

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