RNA id: TU145152


Basic Information

Item Value
RNA id TU145152
length 608
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G125675
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25422012 ~ 25422619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCTTCATATTATAAGCTCAACAATAAGCTAGGTAGGAATATTCCAGTATGTCTGTATGGAGGAAACTGAACAATGTTCTACCAATGAGTCAGGCACCTCTATAACCACTGAACTACTGCAGTCCTTTTTTACTGGAAGGTGTTATTGTGGCACTAAATAAAGCATTCAGCCTGTGCGGCTACAGCCTGCAGTACCACCCTCTCCTACAGCCTGCAGTACCACCCTCTCCTACAGCCTGCATTACCACCCTCTCCTACAGCCTGCAGTACCACCCTCTCCTTGTCCTCTGCAGCTCCAGACGCAGCCTTAACCCCTCGCTCTCCTGCAGCACCCCTGAGATGTGGCTCCCAGAGAACGCTGTGGGCTGGTAGTCCTTCTCATCCTGAGTGGGAGGGAAGGTTGCGGTCTCTCCCACTttgcctcccctctcccctgggGTAGCCACCACCATGGGTCCTTTGGATCCGGCCGCCTGCCGCCTGCCCTCCCCAGGCCCAACACGGCCCTCTGATCTGGGGCCAGGGCCACACAGCAtggtcttcctctccctctggaGTCTCTCCACGGTGCGGCTCAGCTCCTGGACGCTGCGGGTCTTGGCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145145 lncRNA upstream 4512 25417120 ~ 25417500 (+) True G125668
TU144078 lncRNA upstream 49345 25372448 ~ 25372667 (+) True G124711
TU144073 lncRNA upstream 58943 25362838 ~ 25363069 (+) True G124706
TU144072 lncRNA upstream 60001 25361782 ~ 25362011 (+) True G124705
TU144069 lncRNA upstream 63138 25358640 ~ 25358874 (+) True G124702
TU145160 lncRNA downstream 7123 25429742 ~ 25430246 (+) True G125683
TU145161 lncRNA downstream 9581 25432200 ~ 25432435 (+) True G125684
TU145162 lncRNA downstream 10763 25433382 ~ 25433602 (+) True G125685
TU145163 lncRNA downstream 11145 25433764 ~ 25433978 (+) True G125686
TU145202 lncRNA downstream 37007 25459626 ~ 25460855 (+) True G125724
XM_021626013.2 mRNA upstream 7637 25403433 ~ 25414375 (+) True LOC110539045
LOC110534557 mRNA upstream 25678 25377221 ~ 25396334 (+) False LOC110534557
XM_036943419.1 mRNA upstream 96356 25294643 ~ 25325656 (+) False LOC110534548
XM_036943565.1 mRNA downstream 408784 25831403 ~ 25974877 (+) True tsnare1
XM_021626094.2 mRNA downstream 676524 26099143 ~ 26113953 (+) True LOC110539113
XM_021626100.2 mRNA downstream 701094 26123713 ~ 26320714 (+) False cdk14
XM_021626109.2 mRNA downstream 701094 26123713 ~ 26320714 (+) False cdk14
XM_036943595.1 mRNA downstream 701094 26123713 ~ 26330981 (+) False cdk14
TU144043 other upstream 39700 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 548178 24873051 ~ 24873834 (+) True G124451
TU143399 other upstream 877786 24541004 ~ 24544226 (+) False LOC110538915
TU143400 other upstream 878401 24541004 ~ 24543611 (+) True LOC110538915
TU143372 other upstream 1273419 24146861 ~ 24148593 (+) True G124121
TU145423 other downstream 260261 25682880 ~ 25757853 (+) True G125934
TU145896 other downstream 627231 26049850 ~ 26050104 (+) True G126387
TU146263 other downstream 1204230 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 1371591 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 1435079 26857698 ~ 26861242 (+) False G127198

Expression Profile