RNA id: TCONS_00029980


Basic Information

Item Value
RNA id TCONS_00029980
length 2111
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id XLOC_014185
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35361480 ~ 35363590 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCCGGTTCACTTTAACCTTCCAAAGGCCCACAGTTCACTCACGACCTCTCAGCTGCCGTAACTGAGCGCAATGCATTTTACGTCACTGCTGCaaagtacaataaataaaaatgcaccgGTAGGGTTGGCGCAAGATGGCGACCTAGACGGTTGTGCTGGTTTGAGCTCTGAGCCATCTGGAGGAGTTTACATTGTTTGGACGAATATGTATCACTGAAATCAAGGTGGGGACTTTTATAAGTAGTAACTCAGCTAATTTCGATGTCTAAACCCCAGTTATAGACTGAACTATACGCAGATTCAAGAGTTCAGTGCACGTGCCGTCTGCAAAAATGCCAAAGAGTAAAGACCGAAAGTTGTTCTCTTCGCTTTTCGAACCTTCTGGAGACCACGATTCGTTGTCAAATACACCATCAAGCAGTCCTCTCTCAAAAAAACTTTGTCAGGATGAAGATGATCCTAAAGTGTCTAATGTTGACATACTGCGTGCTGTTAATTCCCTCAGTGATCGATTTGCGTCGATGGAACAACAACTTGCCCAGAATTCGATTACGATTGCTAATCTTTCAAAGGCTGTTGATTTTGTCGGAGAGGAGTTTAAATCGATGTCCACACGAGTTAAGGCAAATGAAAATAAGGTCACGCAAATTCAGCAGGTGGTTCAAGTGGTTCAAAGCAAATGCGATCAAGCCGAGATCTACAGCAGAAGGTGGAATTTAAGGATCATCAATCTCAAAGAAACCGATGGAGAAAATATCAGAAGCAAAGTGCTGGAAATCCTTAAAGTTCTCACTCCAGACGAAGCAGATGACATCCGTTTTTATGTTGACACCATTCACAGAATTGGTCGTCCCGGAGCAGGTGGAAATCGCCCTCGTCCGGTCATAATTCAGTTTGCGCTTCGAGTGTACAGGGAGAAAGTCTGGAAAGCGGCTAGGGATCATCCCGCTCTTAAGGAAAGAGGTGTTCGTCTGATGGAGGACTTGACGTTTGCAGAAAGACAACAGAGGAGGTTGCTATGGCCAAAAGTAAAAGAGGCAAGAGAACAGGGCAAGAGAGCTCACTTTCGTGGTGCAGATGCTTTTATTGATGGCAAAAAACTGTCCGTTGAGGAGTTTGAAGCTGAAAAGTGAACACTGACAGAAAACTACTATTTGGTCGCTGGCTCTTGTCAGTGTCAAAAGTTAACTTATTCGTTCAGTCTGATCGTCCGGGTAATGTGACTGTTCCAGGTTAATAACTGTTCAACACCGGCTGCTTTGTGAATTTATTTGTTTCAGGGTTCTTTATACATTTATACTAATTCTGACATccaaatttttgttttatgtctgattttattttcagtaattttaaaattgtttcaCTTAATGTTAGGGGTTTACGAGACAGCATTAAaagaaaatctatttttatttttgttagacATACTAACGCGAATATAATTTTCTTACAAGAGACACATTCATGTGAAAATGATGTTAGGTGGTGGCGATCTCAGTGGGGTGATCAAATTTTCTGTTGTCATGCTTCACATCATTCAGCAGGTGTCGCTGTTCTGTTAAATAAGTTCAAAGGTGATGTGTTAGAATCGGTTAATTCACCAGAAGGGAGATGGATACTGATAACTGTTAAGTTGGATAATTCAGTTTTTATCTTAGTAAATGTTTATGGTTATAATTCATCAGTCCAAGCCAAAAATATGTCCACAGAGTTATCTAACGCTATTTTAGTTTTACAGAGAAAATATAAAGACGCTTTTTTGTTAATTGGAGGCGATTTTAATGATGCCCCAGATGACTTCATAGATCGCTTTCCCCCTCATGCTTCATCCTCTTCAAAATTTAAACTTACAAATTTCTTGTCCTCTTATCTGTCTGTTGTGGATATTTggagatttttaaattttagtgaTAAATGTTACTCCTGGAGCAATTCCTCTAGATCGTTACAATCACGGATTGATTTATGGTTGATCAATCCTGAATGTATTCAATATGTAACAGAAATTTCATATACTTATGCTCCCCTTACAGATCATAAAATGATTGTTCTGTCTCTCTCTGcctctaaaattaataataaaagtctGCGGGGATATTGGAAGTT

Function

GO:

id name namespace
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051604 protein maturation biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0042719 mitochondrial intermembrane space protein transporter complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0042575 DNA polymerase complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029979 lncRNA upstream 446681 34887575 ~ 34914799 (+) True XLOC_014181
TCONS_00029978 lncRNA upstream 609703 34749038 ~ 34751777 (+) True XLOC_014180
TCONS_00029977 lncRNA upstream 623115 34701677 ~ 34738365 (+) True XLOC_014178
TCONS_00029976 lncRNA upstream 1079502 34280764 ~ 34281978 (+) True XLOC_014176
TCONS_00029975 lncRNA upstream 1563070 33795748 ~ 33798410 (+) True XLOC_014169
TCONS_00028236 lncRNA downstream 5012 35368602 ~ 35369837 (+) True XLOC_014186
TCONS_00029981 lncRNA downstream 9943 35373533 ~ 35378466 (+) False XLOC_014187
TCONS_00029985 lncRNA downstream 9943 35373533 ~ 35379985 (+) False XLOC_014187
TCONS_00029987 lncRNA downstream 9943 35373533 ~ 35379985 (+) False XLOC_014187
TCONS_00029989 lncRNA downstream 9943 35373533 ~ 35379985 (+) False XLOC_014187
TCONS_00028234 mRNA upstream 344433 35013129 ~ 35017047 (+) False XLOC_014184
TCONS_00028235 mRNA upstream 345185 35013212 ~ 35016295 (+) True XLOC_014184
TCONS_00028233 mRNA upstream 356533 35002479 ~ 35004947 (+) True XLOC_014183
TCONS_00028231 mRNA upstream 403295 34950200 ~ 34958185 (+) False XLOC_014182
TCONS_00028232 mRNA upstream 403592 34952582 ~ 34957888 (+) True XLOC_014182
TCONS_00028238 mRNA downstream 435794 35799384 ~ 35852390 (+) True XLOC_014190
TCONS_00028244 mRNA downstream 1754957 37118547 ~ 37119891 (+) True XLOC_014198
TCONS_00028245 mRNA downstream 1756901 37120491 ~ 37134211 (+) True XLOC_014199
TCONS_00028246 mRNA downstream 1772110 37135700 ~ 37139452 (+) True XLOC_014200
TCONS_00028247 mRNA downstream 2095020 37458610 ~ 37492517 (+) True XLOC_014201
TCONS_00028229 other upstream 614747 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028225 other upstream 1154200 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028221 other upstream 1225785 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028217 other upstream 1595755 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028194 other upstream 2542906 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028237 other downstream 415252 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028239 other downstream 839488 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028240 other downstream 879201 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028243 other downstream 1316501 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028250 other downstream 2306070 37669660 ~ 37669774 (+) True XLOC_014206

Expression Profile

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