RNA id: TU145514



Basic Information


Item Value
RNA id TU145514
length 314
lncRNA type intronic
GC content 0.46
exon number 2
gene id G126021
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25865690 ~ 25866121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCATAGGGTTCACTACTGTGGAATagacggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaggaatgGACTGTGAATTAAGCGGTCATACTCTATGAGGTCTCTGCAGAGAAATCAAGAATAGGGGGAGGCAGGACATAAAGTGTTCAGGAAGTGATAATGCTATTGCTATATGCTCCCTTGAATGTCCATGCACTGGTTTGTAGGGAATATGCACTGGTTTGTAGGGAATATGCACTGGTTTGGAGGGAATATGCTGTGGGTTGGAGGGAATATGCACTGGTTTGTAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145487 lncRNA upstream 31971 25826199 ~ 25833719 (+) True G125997
TU145447 lncRNA upstream 80787 25727307 ~ 25784903 (+) True G125957
TU145417 lncRNA upstream 133651 25674931 ~ 25732039 (+) True G125930
TU145411 lncRNA upstream 148734 25671258 ~ 25716956 (+) True G125926
TU145416 lncRNA upstream 187338 25674931 ~ 25678352 (+) False G125930
TU145848 lncRNA downstream 149695 26015816 ~ 26016025 (+) True G126341
TU145884 lncRNA downstream 171508 26037629 ~ 26038230 (+) True G126375
TU145927 lncRNA downstream 222111 26088232 ~ 26093529 (+) True G126418
TU145906 lncRNA downstream 251866 26117987 ~ 26118323 (+) True G126397
TU145905 lncRNA downstream 253687 26119808 ~ 26120179 (+) True G126396
XM_021626013.2 mRNA upstream 451315 25403433 ~ 25414375 (+) True LOC110539045
LOC110534557 mRNA upstream 469356 25377221 ~ 25396334 (+) False LOC110534557
XM_036943419.1 mRNA upstream 540034 25294643 ~ 25325656 (+) False LOC110534548
XM_021626094.2 mRNA downstream 233022 26099143 ~ 26113953 (+) True LOC110539113
XM_021626100.2 mRNA downstream 257592 26123713 ~ 26320714 (+) False cdk14
XM_021626109.2 mRNA downstream 257592 26123713 ~ 26320714 (+) False cdk14
XM_036943595.1 mRNA downstream 257592 26123713 ~ 26330981 (+) False cdk14
XM_021626106.2 mRNA downstream 293427 26159548 ~ 26320714 (+) False cdk14
TU145423 other upstream 107837 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 483378 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 991856 24873051 ~ 24873834 (+) True G124451
TU143399 other upstream 1321464 24541004 ~ 24544226 (+) False LOC110538915
TU145896 other downstream 183729 26049850 ~ 26050104 (+) True G126387
TU146263 other downstream 760728 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 928089 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 991577 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 1282055 27148176 ~ 27160645 (+) True LOC110485212

Expression Profile