RNA id: TU145834


Basic Information

Item Value
RNA id TU145834
length 417
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G126327
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26004747 ~ 26005163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTACATTTCGGGGATTTGTGTTTATTGCtttgtattgctaggtattactgcaccgttggagctagaaacagaagtatttcgctgcacctgtcataacatctgcaaaatatgtgtgcTGTGAGGGCTAATGTACGTAGGTAGTTCTGTTCAGGAGTATATCTGAGTCAGTTCCAGGTCTCTAATTGCATACTGGAGGTTTTAGGTCACGATAATTAACCCTGTTCTACGTTTCTCCCAGAAGGTGCTGTGACTTCTACCTTTATTAGTTCTTCCTCTGAAGCATAAAGGGGCAAACTCTTCTAACCTCTGGAGATTTGGATGTTTGATTCGTACAAATTGATGTTTGGTTCTCTGTCTGGTTTCCTGCCCCTCACCTCGCTTTGTGCCTACTTTGATCATTTTTATCAAAGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145827 lncRNA downstream 2427 26002099 ~ 26002320 (-) True G126320
TU145804 lncRNA downstream 20456 25984058 ~ 25984291 (-) True G126297
TU145797 lncRNA downstream 29135 25973457 ~ 25975612 (-) True G126290
TU145667 lncRNA downstream 157497 25743810 ~ 25847250 (-) True G126161
TU145704 lncRNA downstream 177218 25825981 ~ 25827529 (-) True G126198
TU145890 lncRNA upstream 36729 26041892 ~ 26042096 (-) True G126381
TU145895 lncRNA upstream 44195 26049358 ~ 26049596 (-) True G126386
TU146319 lncRNA upstream 98959 26104122 ~ 26113943 (-) True G126775
TU146438 lncRNA upstream 288116 26293279 ~ 26320696 (-) False G126890
TU146439 lncRNA upstream 293479 26298642 ~ 26320696 (-) False G126890
XM_036943516.1 mRNA downstream 214488 25669026 ~ 25790259 (-) False LOC110539098
XM_021626126.2 mRNA upstream 545669 26550832 ~ 26559126 (-) False LOC110539162
XM_036943636.1 mRNA upstream 545669 26550832 ~ 26559127 (-) False LOC110539162
XM_036943629.1 mRNA upstream 545669 26550832 ~ 26559130 (-) False LOC110539162
XR_005036025.1 mRNA upstream 545669 26550832 ~ 26559134 (-) True LOC110539162
XM_036943657.1 mRNA upstream 571790 26576953 ~ 26579210 (-) False LOC118938772
TU144748 other downstream 1228120 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 1470218 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 1679911 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 1734611 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 1843304 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 556451 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 646213 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 1266097 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1760994 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 2091519 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile