RNA id: TU145848


Basic Information

Item Value
RNA id TU145848
length 210
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G126341
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26015816 ~ 26016025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccttacacatctctctctgggACTTTTTACTGCCACACTCAATCACAGGCCTAGAGATAATACTACAGAACAATTACAGTAGAGGACATTATGTGGATTCCCTGCATTTGAGTGTGGGTTTATTACATACATTACTTATGGTGTTTCATAGAAAATATACTGAGAGATTTCaactggagagaagagagacaccCTTCGTTGCCTGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145514 lncRNA upstream 149695 25865690 ~ 25866121 (+) True G126021
TU145487 lncRNA upstream 182097 25826199 ~ 25833719 (+) True G125997
TU145447 lncRNA upstream 230913 25727307 ~ 25784903 (+) True G125957
TU145417 lncRNA upstream 283777 25674931 ~ 25732039 (+) True G125930
TU145411 lncRNA upstream 298860 25671258 ~ 25716956 (+) True G125926
TU145884 lncRNA downstream 21604 26037629 ~ 26038230 (+) True G126375
TU145927 lncRNA downstream 72207 26088232 ~ 26093529 (+) True G126418
TU145906 lncRNA downstream 101962 26117987 ~ 26118323 (+) True G126397
TU145905 lncRNA downstream 103783 26119808 ~ 26120179 (+) True G126396
TU145899 lncRNA downstream 301453 26317478 ~ 26320714 (+) True cdk14
XM_036943565.1 mRNA upstream 40939 25831403 ~ 25974877 (+) True tsnare1
XM_021626013.2 mRNA upstream 601441 25403433 ~ 25414375 (+) True LOC110539045
LOC110534557 mRNA upstream 619482 25377221 ~ 25396334 (+) False LOC110534557
XM_036943419.1 mRNA upstream 690160 25294643 ~ 25325656 (+) False LOC110534548
XM_021626094.2 mRNA downstream 83118 26099143 ~ 26113953 (+) True LOC110539113
XM_021626100.2 mRNA downstream 107688 26123713 ~ 26320714 (+) False cdk14
XM_021626109.2 mRNA downstream 107688 26123713 ~ 26320714 (+) False cdk14
XM_036943595.1 mRNA downstream 107688 26123713 ~ 26330981 (+) False cdk14
XM_021626106.2 mRNA downstream 143523 26159548 ~ 26320714 (+) False cdk14
TU145423 other upstream 257963 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 633504 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 1141982 24873051 ~ 24873834 (+) True G124451
TU143399 other upstream 1471590 24541004 ~ 24544226 (+) False LOC110538915
TU145896 other downstream 33825 26049850 ~ 26050104 (+) True G126387
TU146263 other downstream 610824 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 778185 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 841673 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 1132151 27148176 ~ 27160645 (+) True LOC110485212

Expression Profile