RNA id: TU146056


Basic Information

Item Value
RNA id TU146056
length 207
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G126543
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26333018 ~ 26333224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtggtgtggatctgctttttttctaaagtatttttttttacttctgaaccggaatcccccaacagaagctaactagctactagctagtagtcagctaatcACTGCTAGCGATCATCAGCTAACCTATAGCTCGGAAAACTCTCGCCAGTTTGCACAACACAATTCAAACCaaagcataccggacctattttctctctATATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145899 lncRNA upstream 12304 26317478 ~ 26320714 (+) True cdk14
TU145905 lncRNA upstream 212839 26119808 ~ 26120179 (+) True G126396
TU145906 lncRNA upstream 214695 26117987 ~ 26118323 (+) True G126397
TU145927 lncRNA upstream 239489 26088232 ~ 26093529 (+) True G126418
TU145884 lncRNA upstream 294788 26037629 ~ 26038230 (+) True G126375
TU146058 lncRNA downstream 2333 26335557 ~ 26335980 (+) True G126545
TU146061 lncRNA downstream 4844 26338068 ~ 26338357 (+) True G126548
TU146059 lncRNA downstream 6338 26339562 ~ 26339896 (+) True G126546
TU146062 lncRNA downstream 6693 26339917 ~ 26340149 (+) True G126549
TU146081 lncRNA downstream 25974 26359198 ~ 26359582 (+) True G126561
XM_036943595.1 mRNA upstream 2037 26123713 ~ 26330981 (+) False cdk14
XM_021626115.2 mRNA upstream 6123 26323007 ~ 26326895 (+) True fzd1
XM_021626100.2 mRNA upstream 12304 26123713 ~ 26320714 (+) False cdk14
XM_021626109.2 mRNA upstream 12304 26123713 ~ 26320714 (+) False cdk14
XM_021626106.2 mRNA upstream 12304 26159548 ~ 26320714 (+) False cdk14
XM_021626136.2 mRNA downstream 119457 26452681 ~ 26547503 (+) True LOC110539173
XM_021626143.2 mRNA downstream 246534 26579758 ~ 26581796 (+) True LOC110539182
XM_021626146.2 mRNA downstream 248544 26581768 ~ 26585441 (+) True LOC110539212
XM_036943660.1 mRNA downstream 263041 26596265 ~ 26613437 (+) True LOC110539196
trnar-acg-2 mRNA downstream 307943 26641167 ~ 26641239 (+) True trnar-acg-2
TU145896 other upstream 282914 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 575165 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 950706 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 1459184 24873051 ~ 24873834 (+) True G124451
TU143400 other upstream 1789407 24541004 ~ 24543611 (+) True LOC110538915
TU146263 other downstream 293625 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 460986 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 524474 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 814952 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 856767 27189991 ~ 27190593 (+) True G127644

Expression Profile