RNA id: TU146190



Basic Information


Item Value
RNA id TU146190
length 488
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G126664
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26558016 ~ 26558636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTGTCTTGGTGGCTGCGCGCTGGATGATTTCTGCATCCTCGATACACAGAAAACCACTTTGTAGGAGGTTATCCATAATGCACTGCGTGCTCTTCACCTGGGAAACCAGTAGCTCACGGTGCAAGGTGAGCATTTGGACAGTGGACACATGGCCCGTTAGTCCAGCACGGGCTTCCTCGGCACTGGAGTCCATAATATACATGGCTTCAGCTGCCTGTATTTACGTCAGAACCTTTGATAACATTGTTCTTAGCCGCGCTGTCCTAGTCCGCGGCGGAAAAACTCGGGAACCACAGCTCTCCCAAAAACAAATTCCAGTCTTGGTTATTAAACCATTAAATAGCGCATGACATGATAATAACAAAACGTTTCTCCAGGACTGTTAGAAAAGGAATCTAGTCCTGTCTCAAACAATGtcaggagaaaaaaaacactgaaCACAGTACTGGTTCTTTGAGGAAGTGAAACCAAAAACAGCCTTGGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146184 lncRNA upstream 15999 26502808 ~ 26542017 (+) True G126658
TU146206 lncRNA upstream 30980 26525778 ~ 26527036 (+) True G126679
TU146207 lncRNA upstream 31014 26526699 ~ 26527002 (+) True G126680
TU146129 lncRNA upstream 79509 26460439 ~ 26478507 (+) True G126607
TU146167 lncRNA upstream 93093 26463484 ~ 26464923 (+) True G126641
TU146223 lncRNA downstream 2862 26561498 ~ 26562008 (+) True G126694
TU146224 lncRNA downstream 4411 26563047 ~ 26563342 (+) True G126695
TU146286 lncRNA downstream 101376 26660012 ~ 26661367 (+) True G126748
TU146749 lncRNA downstream 201806 26760442 ~ 26761528 (+) True G127165
TU146774 lncRNA downstream 233392 26792028 ~ 26792291 (+) True G127188
XM_021626136.2 mRNA upstream 10513 26452681 ~ 26547503 (+) True LOC110539173
XM_036943595.1 mRNA upstream 227035 26123713 ~ 26330981 (+) False cdk14
XM_021626115.2 mRNA upstream 231121 26323007 ~ 26326895 (+) True fzd1
XM_021626100.2 mRNA upstream 237302 26123713 ~ 26320714 (+) False cdk14
XM_021626109.2 mRNA upstream 237302 26123713 ~ 26320714 (+) False cdk14
XM_021626143.2 mRNA downstream 21122 26579758 ~ 26581796 (+) True LOC110539182
XM_021626146.2 mRNA downstream 23132 26581768 ~ 26585441 (+) True LOC110539212
XM_036943660.1 mRNA downstream 37629 26596265 ~ 26613437 (+) True LOC110539196
trnar-acg-2 mRNA downstream 82531 26641167 ~ 26641239 (+) True trnar-acg-2
XM_036943668.1 mRNA downstream 180288 26738924 ~ 26741780 (+) True LOC110485091
TU145896 other upstream 507912 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 800163 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 1175704 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 1684182 24873051 ~ 24873834 (+) True G124451
TU143400 other upstream 2014405 24541004 ~ 24543611 (+) True LOC110538915
TU146263 other downstream 68213 26626849 ~ 26628649 (+) True G126727
TU146777 other downstream 235574 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 299062 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 589540 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 631355 27189991 ~ 27190593 (+) True G127644

Expression Profile