RNA id: TU146286



Basic Information


Item Value
RNA id TU146286
length 259
lncRNA type intronic
GC content 0.44
exon number 3
gene id G126748
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26660012 ~ 26661367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aatATAGGGGGGAAAGTGGTAGGTTACTTACTGCAGGTGAAGTATGTCATGTTAGAGGTAAGGAGAGAGTAGGTGAGGTGGACAGggtttactgtagtagtactTACTGCAGGTGAAGTATGTCATGTTAGAGGTAAGGAGAGAGTAGgtgaggtagacagggtttactgtagtagtactTACTGCAGGTGAAGTATGTCATGttagaggtaaggagagagaaggtgaggtagacagggtttactgtagtagtactTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146224 lncRNA upstream 96670 26563047 ~ 26563342 (+) True G126695
TU146223 lncRNA upstream 98004 26561498 ~ 26562008 (+) True G126694
TU146190 lncRNA upstream 101376 26558016 ~ 26558636 (+) True G126664
TU146184 lncRNA upstream 117995 26502808 ~ 26542017 (+) True G126658
TU146749 lncRNA downstream 99075 26760442 ~ 26761528 (+) True G127165
TU146774 lncRNA downstream 130661 26792028 ~ 26792291 (+) True G127188
TU146795 lncRNA downstream 163945 26825312 ~ 26825904 (+) True G127202
TU146802 lncRNA downstream 166881 26828248 ~ 26828451 (+) True G127209
TU146804 lncRNA downstream 168828 26830195 ~ 26830696 (+) True G127211
trnar-acg-2 mRNA upstream 18773 26641167 ~ 26641239 (+) True trnar-acg-2
XM_036943660.1 mRNA upstream 46575 26596265 ~ 26613437 (+) True LOC110539196
XM_021626146.2 mRNA upstream 74571 26581768 ~ 26585441 (+) True LOC110539212
XM_021626143.2 mRNA upstream 78216 26579758 ~ 26581796 (+) True LOC110539182
XM_021626136.2 mRNA upstream 112509 26452681 ~ 26547503 (+) True LOC110539173
XM_036943668.1 mRNA downstream 77557 26738924 ~ 26741780 (+) True LOC110485091
XM_021556142.2 mRNA downstream 85604 26746971 ~ 26765817 (+) True LOC110485092
NM_001160642.2 mRNA downstream 109097 26770464 ~ 26779479 (+) True rwdd1
XM_021556171.2 mRNA downstream 152117 26813484 ~ 26823336 (+) True LOC110485096
XM_021556215.2 mRNA downstream 236562 26897929 ~ 26903411 (+) False LOC110485145
TU146263 other upstream 31363 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 609908 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 902159 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 1277700 25377484 ~ 25382312 (+) True LOC110534557
TU143765 other upstream 1786178 24873051 ~ 24873834 (+) True G124451
TU146777 other downstream 132843 26794210 ~ 26795762 (+) True G127190
TU146788 other downstream 196331 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 486809 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 528624 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 640711 27302078 ~ 27303555 (+) True LOC110485466

Expression Profile