RNA id: TU146795


Basic Information

Item Value
RNA id TU146795
length 593
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G127202
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26825312 ~ 26825904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCACTGTTTACCACAGCTAGACAGACTGCGTCTCAAAATTACTCCCATCAAAGGAAACGGTTGTTTATTGTATATTTTTCACATCATGATAGCAGGTCTACAGAGCTTGCATATGTTGCTCTGTAGTTCTAACTGTTGTGTTGCACACAAAAACACCTAAACTCTCCCTATTTATGACTGTAAACAGTTTAATGCTACATTTTGTCATGCATATCAAAAATTGTGTATAGTTTTCTAATATTTCTCATGTTTGTACAATTGGATGATATATCATTTTTATGTTTTAGGTTGATTTATTTCTCCCCCATTTGGGAATtgttttgtgttttcattttGGCCTTGATACAGAGGCTATAAGGACTTCTGCGGCATTCTGTCCAGAATCCCGTAGTTTAGGTGATTACCATATCATGCCACCATTGTGGTTCTGTTTCCTTTATGCCATTGGACCACAGAGGGCTGTGTGTGAAGCTGGACTAAACAACTCCTCTCTGTGTTACTCATGGAACTGTTGTCTGGCTCTTCTATAAGGGGTTAATGTTGACTTAACTGTAAAATAAtgacaaataaatacataaattatCTGTTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146774 lncRNA upstream 33021 26792028 ~ 26792291 (+) True G127188
TU146749 lncRNA upstream 63784 26760442 ~ 26761528 (+) True G127165
TU146286 lncRNA upstream 163945 26660012 ~ 26661367 (+) True G126748
TU146224 lncRNA upstream 261970 26563047 ~ 26563342 (+) True G126695
TU146223 lncRNA upstream 263304 26561498 ~ 26562008 (+) True G126694
TU146802 lncRNA downstream 2344 26828248 ~ 26828451 (+) True G127209
TU146804 lncRNA downstream 4291 26830195 ~ 26830696 (+) True G127211
TU146810 lncRNA downstream 8203 26834107 ~ 26855129 (+) True G127216
TU146789 lncRNA downstream 31794 26857698 ~ 26859385 (+) True G127198
TU146792 lncRNA downstream 35388 26861292 ~ 26863437 (+) True G127200
XM_021556171.2 mRNA upstream 1976 26813484 ~ 26823336 (+) True LOC110485096
NM_001160642.2 mRNA upstream 45833 26770464 ~ 26779479 (+) True rwdd1
XM_021556142.2 mRNA upstream 59495 26746971 ~ 26765817 (+) True LOC110485092
XM_036943668.1 mRNA upstream 83532 26738924 ~ 26741780 (+) True LOC110485091
trnar-acg-2 mRNA upstream 184073 26641167 ~ 26641239 (+) True trnar-acg-2
XM_021556215.2 mRNA downstream 72025 26897929 ~ 26903411 (+) False LOC110485145
XM_021556222.2 mRNA downstream 73985 26899889 ~ 26903411 (+) True LOC110485145
XM_036934604.1 mRNA downstream 78997 26904901 ~ 26909167 (+) True LOC110533712
XM_036943780.1 mRNA downstream 91491 26917395 ~ 26931359 (+) False LOC110485187
XM_036943774.1 mRNA downstream 91491 26917395 ~ 26934123 (+) False LOC110485187
TU146777 other upstream 29550 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 196663 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 775208 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 1067459 25682880 ~ 25757853 (+) True G125934
TU144043 other upstream 1443000 25377484 ~ 25382312 (+) True LOC110534557
TU146788 other downstream 31794 26857698 ~ 26861242 (+) False G127198
TU147247 other downstream 322272 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 364087 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 476174 27302078 ~ 27303555 (+) True LOC110485466
TU147867 other downstream 890578 27716482 ~ 27717163 (+) True G128185

Expression Profile