RNA id: TU146854


Basic Information

Item Value
RNA id TU146854
length 550
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G127256
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26936418 ~ 26936967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCAGCCGGGCCTTGATAAACTGCCTCTGATGTGTTTGAACAGGGCTTGATCAAATGCCTGCACATCTAGTATTATTCAGTTGCCTACCTGGTATTTTACTttgggggttaagtgccttgcacaaCTACAGGAGATTGTAAATGGGATCAGAGAGCAGCCTCCCGGTGTTAATACCACATTACACTTACTTTTTTATACATTATGTACATAGAAACACTGCTAATGGTTGGTCATGGAAAAGTCATGAAATTCCATCTATCAAAATGTGTAtgaaccacaggaggctgctgaggtgaAGACGGCTTATAATAATGACCGGAACGGACAAAATGGAAAGGTATCAAACATGGaacccatgtgtttgatgtatttgatgccattccacggattctgctccagccattaacactagcctgtcctccccaattaaggtgcctccTGGGTATGAACCCTGTTACTACTATACCATAAATCAATCAGGGATCTTGTTTTGAGCAGGGGCTGGGTTGGCACCTTCCTGTAATAAAGATGGAATACTACTACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146792 lncRNA upstream 72981 26861292 ~ 26863437 (+) True G127200
TU146789 lncRNA upstream 77033 26857698 ~ 26859385 (+) True G127198
TU146810 lncRNA upstream 81289 26834107 ~ 26855129 (+) True G127216
TU146804 lncRNA upstream 105722 26830195 ~ 26830696 (+) True G127211
TU146802 lncRNA upstream 107967 26828248 ~ 26828451 (+) True G127209
TU146996 lncRNA downstream 2705 26939672 ~ 26939929 (+) True G127376
TU147001 lncRNA downstream 5189 26942156 ~ 26942373 (+) True G127381
TU147010 lncRNA downstream 11261 26948228 ~ 26948446 (+) True G127390
TU147016 lncRNA downstream 14971 26951938 ~ 26952282 (+) True G127396
TU147017 lncRNA downstream 15475 26952442 ~ 26985934 (+) True G127397
XM_021556256.2 mRNA upstream 1940 26917479 ~ 26934478 (+) True LOC110485187
XM_036943774.1 mRNA upstream 2295 26917395 ~ 26934123 (+) False LOC110485187
XM_036943786.1 mRNA upstream 2295 26917396 ~ 26934123 (+) False LOC110485187
XM_036943780.1 mRNA upstream 5059 26917395 ~ 26931359 (+) False LOC110485187
XM_036934604.1 mRNA upstream 27251 26904901 ~ 26909167 (+) True LOC110533712
XM_021556276.2 mRNA downstream 210913 27147880 ~ 27175747 (+) False LOC110485212
XM_021556285.2 mRNA downstream 242020 27178987 ~ 27182559 (+) False LOC110485224
XM_036943823.1 mRNA downstream 242641 27179608 ~ 27182559 (+) True LOC110485224
XM_021556549.2 mRNA downstream 351205 27288172 ~ 27303644 (+) False LOC110485466
XM_021556555.2 mRNA downstream 351205 27288172 ~ 27303644 (+) False LOC110485466
TU146788 other upstream 75176 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 140656 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 307769 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 886314 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 1178565 25682880 ~ 25757853 (+) True G125934
TU147247 other downstream 211209 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 253024 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 365111 27302078 ~ 27303555 (+) True LOC110485466
TU147867 other downstream 779515 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 1151680 28088647 ~ 28089445 (+) True G128436

Expression Profile