RNA id: TU147001


Basic Information

Item Value
RNA id TU147001
length 218
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G127381
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26942156 ~ 26942373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAACTATTAAAAAGTGAGTCACTGCCATTATACAACTGTGGCCCCTGCATATGGAAAATTAAACTGTGGAAAGAGCCTTCAATGGCCCTGTTGCTCACCCTAGTAAAGACCACATTCATGACTGTTTGTTCATTTGCATGTGTTGTGTTAATAGGGTCATCACTTTATTTGACAGGTTTCTACAGAGAAAGTGTAATATACAGAGCAACTGGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146996 lncRNA upstream 2227 26939672 ~ 26939929 (+) True G127376
TU146854 lncRNA upstream 5189 26936418 ~ 26936967 (+) True G127256
TU146792 lncRNA upstream 78719 26861292 ~ 26863437 (+) True G127200
TU146789 lncRNA upstream 82771 26857698 ~ 26859385 (+) True G127198
TU146810 lncRNA upstream 87027 26834107 ~ 26855129 (+) True G127216
TU147010 lncRNA downstream 5855 26948228 ~ 26948446 (+) True G127390
TU147016 lncRNA downstream 9565 26951938 ~ 26952282 (+) True G127396
TU147017 lncRNA downstream 10069 26952442 ~ 26985934 (+) True G127397
TU147053 lncRNA downstream 43584 26985957 ~ 26986261 (+) True G127433
TU147106 lncRNA downstream 93969 27036342 ~ 27042176 (+) True G127482
XM_021556256.2 mRNA upstream 7678 26917479 ~ 26934478 (+) True LOC110485187
XM_036943774.1 mRNA upstream 8033 26917395 ~ 26934123 (+) False LOC110485187
XM_036943786.1 mRNA upstream 8033 26917396 ~ 26934123 (+) False LOC110485187
XM_036943780.1 mRNA upstream 10797 26917395 ~ 26931359 (+) False LOC110485187
XM_036934604.1 mRNA upstream 32989 26904901 ~ 26909167 (+) True LOC110533712
XM_021556276.2 mRNA downstream 205507 27147880 ~ 27175747 (+) False LOC110485212
XM_021556285.2 mRNA downstream 236614 27178987 ~ 27182559 (+) False LOC110485224
XM_036943823.1 mRNA downstream 237235 27179608 ~ 27182559 (+) True LOC110485224
XM_021556549.2 mRNA downstream 345799 27288172 ~ 27303644 (+) False LOC110485466
XM_021556555.2 mRNA downstream 345799 27288172 ~ 27303644 (+) False LOC110485466
TU146788 other upstream 80914 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 146394 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 313507 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 892052 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 1184303 25682880 ~ 25757853 (+) True G125934
TU147247 other downstream 205803 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 247618 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 359705 27302078 ~ 27303555 (+) True LOC110485466
TU147867 other downstream 774109 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 1146274 28088647 ~ 28089445 (+) True G128436

Expression Profile