RNA id: TU147106


Basic Information

Item Value
RNA id TU147106
length 1209
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G127482
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27036342 ~ 27042176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagagacagatacagagacagatacagagacagatacagatacagagacagatccagagacagatccagagacagatccagagacagagacagatacaggtacagagacagagacagagacagatccagatccagatccagatccagagacagagacagatacacatacagagacagagacagatacagatccagagacagatacagagacagatacagatacaggtccagagacagacacagagacagatccagagacagatacaggtacagagacagagacagatacagagacagatacagagacagatccagatacaggtccagagacagatacagagacagatccagagacagatacaggtacagagacagagacagatacagagacagaaacagagacagatacagagacagatacagatccagagacagatccagagacagatccagagacagatccagagacagatataggtacatagacagagacagagacagatccagatacagagacagatacagagacagagacagatacagagacagatacagatacagatacagatacagagacagatacagatacagatacagagacaggtacagagacagatacaggtacagagacagagacagagacagagacagatacagagacatatacagagacagagacagagacagagacagatacagagacagatacagatacagagacagatacagatacagatacagagacagagacagatacagagacagatacagagacagatccagagacagatacaggtacatagacagagacagagacagatacagagacagagacagagacagatacagatacagatacagatacagatacagatacagagacaggtacagagacagatacaggtacatagacagagacagatacagagacagatccagatacaGCGACAGATCCAGATAcagcgacagagacagatacagatacagagacagatccagagacagatccagagacagatccagagacagatacaggtacatagacagagacagagacagagacagatacagatacagatacagagacagatccagagacagatacaggtacatagacagagacagagacagatacagatacagatacagatacatatacagagacagagacagagacagatacagagacagatacagagacagatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147053 lncRNA upstream 50081 26985957 ~ 26986261 (+) True G127433
TU147017 lncRNA upstream 50408 26952442 ~ 26985934 (+) True G127397
TU147016 lncRNA upstream 84060 26951938 ~ 26952282 (+) True G127396
TU147010 lncRNA upstream 87896 26948228 ~ 26948446 (+) True G127390
TU147001 lncRNA upstream 93969 26942156 ~ 26942373 (+) True G127381
TU147127 lncRNA downstream 1274 27043450 ~ 27043680 (+) True G127500
TU147130 lncRNA downstream 2320 27044496 ~ 27044734 (+) True G127503
TU147140 lncRNA downstream 8161 27050337 ~ 27050669 (+) True G127513
TU147144 lncRNA downstream 12456 27054632 ~ 27054851 (+) True G127517
TU147200 lncRNA downstream 70032 27112208 ~ 27112513 (+) True G127571
XM_021556256.2 mRNA upstream 101864 26917479 ~ 26934478 (+) True LOC110485187
XM_036943774.1 mRNA upstream 102219 26917395 ~ 26934123 (+) False LOC110485187
XM_036943786.1 mRNA upstream 102219 26917396 ~ 26934123 (+) False LOC110485187
XM_036943780.1 mRNA upstream 104983 26917395 ~ 26931359 (+) False LOC110485187
XM_036934604.1 mRNA upstream 127175 26904901 ~ 26909167 (+) True LOC110533712
XM_021556276.2 mRNA downstream 105704 27147880 ~ 27175747 (+) False LOC110485212
XM_021556285.2 mRNA downstream 136811 27178987 ~ 27182559 (+) False LOC110485224
XM_036943823.1 mRNA downstream 137432 27179608 ~ 27182559 (+) True LOC110485224
XM_021556549.2 mRNA downstream 245996 27288172 ~ 27303644 (+) False LOC110485466
XM_021556555.2 mRNA downstream 245996 27288172 ~ 27303644 (+) False LOC110485466
TU146788 other upstream 175100 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 240580 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 407693 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 986238 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 1278489 25682880 ~ 25757853 (+) True G125934
TU147247 other downstream 106000 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 147815 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 259902 27302078 ~ 27303555 (+) True LOC110485466
TU147867 other downstream 674306 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 1046471 28088647 ~ 28089445 (+) True G128436

Expression Profile