RNA id: TU147144


Basic Information

Item Value
RNA id TU147144
length 220
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G127517
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27054632 ~ 27054851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagcccttcgtacatcagctgatatctcaaagtgctgaacagaaacccagcctaaaaccacacacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagaatataacagaacatggcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147140 lncRNA upstream 3963 27050337 ~ 27050669 (+) True G127513
TU147130 lncRNA upstream 9898 27044496 ~ 27044734 (+) True G127503
TU147127 lncRNA upstream 10952 27043450 ~ 27043680 (+) True G127500
TU147106 lncRNA upstream 12456 27036342 ~ 27042176 (+) True G127482
TU147053 lncRNA upstream 68371 26985957 ~ 26986261 (+) True G127433
TU147200 lncRNA downstream 57357 27112208 ~ 27112513 (+) True G127571
TU147237 lncRNA downstream 86362 27141213 ~ 27141510 (+) True G127608
TU147336 lncRNA downstream 215282 27270133 ~ 27270723 (+) True G127702
TU147343 lncRNA downstream 225667 27280518 ~ 27280720 (+) True G127709
TU147346 lncRNA downstream 228539 27283390 ~ 27283688 (+) True G127712
XM_021556256.2 mRNA upstream 120154 26917479 ~ 26934478 (+) True LOC110485187
XM_036943774.1 mRNA upstream 120509 26917395 ~ 26934123 (+) False LOC110485187
XM_036943786.1 mRNA upstream 120509 26917396 ~ 26934123 (+) False LOC110485187
XM_036943780.1 mRNA upstream 123273 26917395 ~ 26931359 (+) False LOC110485187
XM_036934604.1 mRNA upstream 145465 26904901 ~ 26909167 (+) True LOC110533712
XM_021556276.2 mRNA downstream 93029 27147880 ~ 27175747 (+) False LOC110485212
XM_021556285.2 mRNA downstream 124136 27178987 ~ 27182559 (+) False LOC110485224
XM_036943823.1 mRNA downstream 124757 27179608 ~ 27182559 (+) True LOC110485224
XM_021556549.2 mRNA downstream 233321 27288172 ~ 27303644 (+) False LOC110485466
XM_021556555.2 mRNA downstream 233321 27288172 ~ 27303644 (+) False LOC110485466
TU146788 other upstream 193390 26857698 ~ 26861242 (+) False G127198
TU146777 other upstream 258870 26794210 ~ 26795762 (+) True G127190
TU146263 other upstream 425983 26626849 ~ 26628649 (+) True G126727
TU145896 other upstream 1004528 26049850 ~ 26050104 (+) True G126387
TU145423 other upstream 1296779 25682880 ~ 25757853 (+) True G125934
TU147247 other downstream 93325 27148176 ~ 27160645 (+) True LOC110485212
TU147273 other downstream 135140 27189991 ~ 27190593 (+) True G127644
TU147350 other downstream 247227 27302078 ~ 27303555 (+) True LOC110485466
TU147867 other downstream 661631 27716482 ~ 27717163 (+) True G128185
TU148132 other downstream 1033796 28088647 ~ 28089445 (+) True G128436

Expression Profile