RNA id: TU147899


Basic Information

Item Value
RNA id TU147899
length 376
lncRNA type intronic
GC content 0.53
exon number 1
gene id G128217
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27766157 ~ 27766532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacacagccaggtctctgacctcctccctataggctgtcttgtcgttgtcggtgatcaggcctaccactactGTGTCAtcggtaaacttaatgatggtgttggagtcgtgcctggccgtgcagtcatgagagaatagggagtacaggaggggactgagcatgcacccctgaggggcccctgtgttgaggatcagcgtggcggatgtgttgttatctacccttaccacctgggggcagcccatcaggaagtccaggatccagtttcagagggaggtgtttagtcccagggtccttagcttattgatgagctttgagggcactatggtgttgaacgctgagttgtagtcaatgaatagcattctcacataggtgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147888 lncRNA upstream 15839 27750106 ~ 27750318 (+) True G128206
TU147885 lncRNA upstream 19610 27746274 ~ 27746547 (+) True G128203
TU147878 lncRNA upstream 34659 27731290 ~ 27731498 (+) True G128196
TU147875 lncRNA upstream 37285 27728671 ~ 27728872 (+) True G128193
TU147874 lncRNA upstream 38542 27727327 ~ 27727615 (+) True G128192
TU147903 lncRNA downstream 3913 27770445 ~ 27770678 (+) True G128221
TU147905 lncRNA downstream 5947 27772479 ~ 27772822 (+) True G128223
TU147907 lncRNA downstream 7806 27774338 ~ 27774540 (+) True G128225
TU147913 lncRNA downstream 17767 27784299 ~ 27784571 (+) True G128231
TU147915 lncRNA downstream 20252 27786784 ~ 27787355 (+) True G128233
XM_021556734.2 mRNA upstream 88143 27651611 ~ 27678014 (+) False LOC110485628
XM_036944150.1 mRNA upstream 88143 27651987 ~ 27678014 (+) True LOC110485628
XR_005036074.1 mRNA upstream 88421 27651611 ~ 27677736 (+) False LOC110485628
XM_036944084.1 mRNA upstream 346992 27409765 ~ 27419165 (+) False LOC110485563
LOC110534576 mRNA downstream 141257 27907789 ~ 27909986 (+) True LOC110534576
XM_021556797.2 mRNA downstream 398628 28165160 ~ 28171323 (+) False LOC110485682
XM_021556813.2 mRNA downstream 398628 28165160 ~ 28171323 (+) False LOC110485682
XM_036944270.1 mRNA downstream 398628 28165160 ~ 28171323 (+) False LOC110485682
XM_021556822.2 mRNA downstream 398629 28165161 ~ 28171323 (+) False LOC110485682
TU147867 other upstream 48994 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 462602 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 575564 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 605512 27148176 ~ 27160645 (+) True LOC110485212
TU146788 other upstream 904915 26857698 ~ 26861242 (+) False G127198
TU148132 other downstream 322115 28088647 ~ 28089445 (+) True G128436
TU148197 other downstream 484310 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 1165524 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 1173367 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1711085 29477617 ~ 29478130 (+) True LOC110534631

Expression Profile