RNA id: TU149034


Basic Information

Item Value
RNA id TU149034
length 226
lncRNA type intronic
GC content 0.36
exon number 1
gene id G129275
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27794660 ~ 27794885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTATTCATTACATTGTTTGTACTTGGTTAATGCTCTTCCCACTACCGTGAGGAATCTGCAGATAGAAGACCATAGCTCAGACAGTCATAGACAAcgggtctttctctctctctttctctctctctctgccgtatCAATGAATCCATCTTAAACTGCGAGTCGTACACTTTGAGAGCCTTTTTAGACATGATGTCATTGGCATGACTGACGAGAGGCACTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149033 lncRNA downstream 233 27794204 ~ 27794427 (-) True G129274
TU149021 lncRNA downstream 14520 27779929 ~ 27780140 (-) True G129262
TU149018 lncRNA downstream 19221 27775140 ~ 27775439 (-) True G129259
TU149015 lncRNA downstream 21857 27772600 ~ 27772803 (-) True G129256
TU149014 lncRNA downstream 22313 27772129 ~ 27772347 (-) True G129255
TU149128 lncRNA upstream 107480 27902365 ~ 27905785 (-) True G129360
TU149137 lncRNA upstream 124608 27919493 ~ 27919757 (-) True G129368
TU149140 lncRNA upstream 128612 27923497 ~ 27923916 (-) True G129371
TU149114 lncRNA upstream 132386 27927271 ~ 27927497 (-) True G129346
TU149142 lncRNA upstream 134600 27929485 ~ 27931710 (-) True LOC110534585
XM_021556680.2 mRNA downstream 161550 27419646 ~ 27633110 (-) True LOC110485571
XM_021556673.2 mRNA downstream 246862 27419646 ~ 27547798 (-) False LOC110485571
XM_036944233.1 mRNA upstream 132779 27927664 ~ 27929816 (-) False LOC110534585
XM_036944219.1 mRNA upstream 138504 27933389 ~ 27942324 (-) False LOC110485663
XM_036944222.1 mRNA upstream 138504 27933389 ~ 27942324 (-) False LOC110485663
XM_036944213.1 mRNA upstream 138504 27933389 ~ 27975667 (-) False LOC110485663
XM_036944210.1 mRNA upstream 138504 27933389 ~ 27981431 (-) False LOC110485663
TU149009 other downstream 28128 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 516536 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1131646 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 1232533 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 3018033 24775220 ~ 24776627 (-) True G125305
TU149117 other upstream 301797 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 515434 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 682301 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 2074161 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 3094808 30889693 ~ 30895983 (-) True c2h8orf37

Expression Profile