RNA id: TU149225



Basic Information


Item Value
RNA id TU149225
length 382
lncRNA type intronic
GC content 0.54
exon number 1
gene id G129450
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28069797 ~ 28070178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtaatctgagggaaatatgtctctctaatatggtcatacattgggcaggaggttaggaagtgcagctcagtttccacctcattttgtgggcagtgagcacatagcctgtcttctcttgagagccatgtctgcctacggcggcctttctcaatagcaaggctatgctcactgagtctgtacatagtcaaagctttccttaattttgggccagtcacagtggtcaggtattctgccgctgtgtactctctgtttagggccaaatagcattctagtttgctctgtttttttgttaattctttccaatgtgtcaagtaattatcattttgttttctcatgatttggttgggtctaattgtgctgttgtcctggggctctgtaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149221 lncRNA downstream 1784 28067793 ~ 28068013 (-) True G129446
TU149220 lncRNA downstream 7576 28061945 ~ 28062221 (-) True G129445
TU149219 lncRNA downstream 9313 28060001 ~ 28060484 (-) True G129444
TU149218 lncRNA downstream 9939 28059642 ~ 28059858 (-) True G129443
TU149209 lncRNA downstream 24285 28045295 ~ 28045512 (-) True G129434
TU149228 lncRNA upstream 6927 28077105 ~ 28077330 (-) True G129453
TU149229 lncRNA upstream 9685 28079863 ~ 28080202 (-) True G129454
TU149230 lncRNA upstream 10258 28080436 ~ 28080742 (-) True G129455
TU149240 lncRNA upstream 14727 28084905 ~ 28085138 (-) True G129465
TU149241 lncRNA upstream 15326 28085504 ~ 28085782 (-) True G129466
XM_036944210.1 mRNA downstream 88366 27933389 ~ 27981431 (-) False LOC110485663
XM_036944213.1 mRNA downstream 94130 27933389 ~ 27975667 (-) False LOC110485663
XM_036944219.1 mRNA downstream 127473 27933389 ~ 27942324 (-) False LOC110485663
XM_036944222.1 mRNA downstream 127473 27933389 ~ 27942324 (-) False LOC110485663
XM_036944233.1 mRNA downstream 139981 27927664 ~ 27929816 (-) False LOC110534585
XM_021556843.2 mRNA upstream 82311 28152489 ~ 28164855 (-) True LOC110485705
XM_021556854.2 mRNA upstream 182447 28252625 ~ 28265466 (-) True LOC110485712
XM_036944341.1 mRNA upstream 247867 28318045 ~ 28328821 (-) False LOC110485793
XM_036944333.1 mRNA upstream 247867 28318045 ~ 28328849 (-) False LOC110485793
XM_036944327.1 mRNA upstream 247867 28318045 ~ 28329185 (-) False LOC110485793
TU149009 other downstream 303265 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 791673 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1406783 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 1507670 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 3293170 24775220 ~ 24776627 (-) True G125305
TU149117 other upstream 26504 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 240141 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 407008 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 1798868 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 2819515 30889693 ~ 30895983 (-) True c2h8orf37

Expression Profile