RNA id: TU148116


Basic Information

Item Value
RNA id TU148116
length 847
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G128423
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28073761 ~ 28074607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCCCCGGAAGGAAGGCGACGTCTTCGCATAGCCTGCTGCGGATGGATCAATAAGCGAAGCCCCCTCTCTTCGAATGCTCCTTTGACATACCAACGGGGGAAGCCCATCATAAATCACACATTCTTACAAAGGAATCACTCACCCGATGTTGCTCAACGCCTGCTCGAATAGCTCCGTCTGCAGAATGTTCTGAGGCGGCGTAAAAGCCTCATTAAAATGGGATAGAACGGAGCTACAAAATTGACGCAATGTATCAAACTGCATTTTCCTCCTTTTTCCTTCGTGTCTTTTATCCTCAGTATGGCCCTTTTCCTCAAACACAATACATCCACCTGCGCTGCCTCGCTCTCCGTCCGGACCCGCGTCTGTTTATCTCCAGGGACGCATTAAACGCGAAAACGCCAATCAAGTTCCATATTTCTCCTGATCTTGGTAGAATGAGTCCTTAAATGAAAAGCAGTCGAGGCTGGAATGTACAGTCATAATGCTCCGAACTTAACCCGACAAAATATAGCGGGCAGTAGCAGGATCTATTTGCAGTGGAGGTGAGGGGGGAAAGCAGCAGCGAGGCATCTTCCAGCAAAGCAAGCTTCACTTACCGGTGCATCAGGGGCAGCTCATACTCAACTCATATTTCTCTCTGCCTATTAGAgcacgcatacaaacacacacatacatacacacacaacacgcaaGCATTCGTTCACGCACACGCTTGCcgtatccttctctttctcataCTCTGGACCGCGCACGCAGATACAATACATGGGCGCGCAGAGATGCTGTCGTCAGTGCTTTTGCCATATATGACTGCCAACCATCAGCTCTCATAAGTAATAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148114 lncRNA upstream 3719 28069796 ~ 28070042 (+) True G128421
TU148108 lncRNA upstream 17060 28056485 ~ 28056701 (+) True G128415
TU148104 lncRNA upstream 22023 28051445 ~ 28051738 (+) True G128411
TU148060 lncRNA upstream 50874 27991303 ~ 28022887 (+) True G128368
TU148068 lncRNA upstream 68418 28004863 ~ 28005343 (+) True G128376
TU148126 lncRNA downstream 9561 28084168 ~ 28084780 (+) False G128431
TU148124 lncRNA downstream 9763 28084370 ~ 28084656 (+) False G128431
TU148127 lncRNA downstream 9763 28084370 ~ 28084780 (+) True G128431
TU148134 lncRNA downstream 17811 28092418 ~ 28092998 (+) True G128438
TU148155 lncRNA downstream 65671 28140278 ~ 28140905 (+) True G128459
LOC110534576 mRNA upstream 163775 27907789 ~ 27909986 (+) True LOC110534576
XM_021556734.2 mRNA upstream 395747 27651611 ~ 27678014 (+) False LOC110485628
XM_036944150.1 mRNA upstream 395747 27651987 ~ 27678014 (+) True LOC110485628
XR_005036074.1 mRNA upstream 396025 27651611 ~ 27677736 (+) False LOC110485628
XM_036944088.1 mRNA upstream 654596 27410989 ~ 27419165 (+) True LOC110485563
XM_021556797.2 mRNA downstream 90553 28165160 ~ 28171323 (+) False LOC110485682
XM_021556813.2 mRNA downstream 90553 28165160 ~ 28171323 (+) False LOC110485682
XM_036944270.1 mRNA downstream 90553 28165160 ~ 28171323 (+) False LOC110485682
XM_021556822.2 mRNA downstream 90554 28165161 ~ 28171323 (+) False LOC110485682
XM_021556831.2 mRNA downstream 90554 28165161 ~ 28171323 (+) False LOC110485682
TU147867 other upstream 356598 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 770206 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 883168 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 913116 27148176 ~ 27160645 (+) True LOC110485212
TU146788 other upstream 1212519 26857698 ~ 26861242 (+) False G127198
TU148132 other downstream 14040 28088647 ~ 28089445 (+) True G128436
TU148197 other downstream 176235 28250842 ~ 28547915 (+) True G128490
TU148570 other downstream 857449 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 865292 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1403010 29477617 ~ 29478130 (+) True LOC110534631

Expression Profile