RNA id: TU149230



Basic Information


Item Value
RNA id TU149230
length 307
lncRNA type intronic
GC content 0.37
exon number 1
gene id G129455
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28080436 ~ 28080742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atttttttcttctatatttgacaaaatttctaaaaaactgtttttgctttgtcattatgaggtattgtgtgtagattaacgaAACAATCAAacgttttaatccattttataataaggctgtagcgtatcaaaatgtggaaaaagtcaaggggtctgaatacttttcgaatgcactgtacaataTACCATACCCCCATTCCATGAATTCAACTTTGACCTACCAGcaccatcacccactgtcacagAACACCATCACCCACTTACCCCAAGGTGGCTCCATTTACCCTGTCCCTATGCTGAATTGACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149229 lncRNA downstream 234 28079863 ~ 28080202 (-) True G129454
TU149228 lncRNA downstream 3106 28077105 ~ 28077330 (-) True G129453
TU149225 lncRNA downstream 10258 28069797 ~ 28070178 (-) True G129450
TU149221 lncRNA downstream 12423 28067793 ~ 28068013 (-) True G129446
TU149220 lncRNA downstream 18215 28061945 ~ 28062221 (-) True G129445
TU149240 lncRNA upstream 4163 28084905 ~ 28085138 (-) True G129465
TU149241 lncRNA upstream 4762 28085504 ~ 28085782 (-) True G129466
TU149243 lncRNA upstream 9291 28090033 ~ 28090268 (-) True G129468
TU149246 lncRNA upstream 12411 28093153 ~ 28093358 (-) True G129471
TU149239 lncRNA upstream 87202 28167944 ~ 28168394 (-) True G129464
XM_036944201.1 mRNA downstream 5926 27933389 ~ 28074510 (-) False LOC110485663
XM_036944176.1 mRNA downstream 5929 27933389 ~ 28074507 (-) False LOC110485663
XM_021556843.2 mRNA upstream 71747 28152489 ~ 28164855 (-) True LOC110485705
XM_021556854.2 mRNA upstream 171883 28252625 ~ 28265466 (-) True LOC110485712
XM_036944341.1 mRNA upstream 237303 28318045 ~ 28328821 (-) False LOC110485793
XM_036944333.1 mRNA upstream 237303 28318045 ~ 28328849 (-) False LOC110485793
XM_036944327.1 mRNA upstream 237303 28318045 ~ 28329185 (-) False LOC110485793
TU149009 other downstream 313904 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 802312 27271260 ~ 27278124 (-) True LOC110485245
TU146643 other downstream 1417422 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 1518309 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 3303809 24775220 ~ 24776627 (-) True G125305
TU149117 other upstream 15940 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 229577 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 396444 28477186 ~ 28477831 (-) True LOC110534614
TU150630 other upstream 1788304 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 2808951 30889693 ~ 30895983 (-) True c2h8orf37

Expression Profile