RNA id: TU148197


Basic Information

Item Value
RNA id TU148197
length 1438
RNA type TUCP
GC content 0.40
exon number 2
gene id G128490
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28250842 ~ 28547915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGAGTTAGGAAAGAGCGTTTGTGTTTATATAAATGTTACAATAATTTCATAACTTAGTGCACTTGAATTCAAAGTTtacactacagtgccttgcaatagtattcatcccccttggtgtttttactattttgttgcattacaacctgtaatttaaatggatttcatgtaatgaacatacaaaatagtccaaattggtgaagtgaaatttaaaaaaataacttgcttcaaaaaaaaataaaaacgtaaAAGTGGTGTgttcatatgtattcaccccctttgctatgaagcccccaaataagatctggtgcaaccaactaccttagtcacataattagttagattgcacacaggtggactttatttaagtgtcacatgacctcagtgtgtatacatacacatctgttctgaaaggccccaaagTCTGTAacaccacaaagaccaaggaggtcagggacaaagttgtggagaagtacagatcagggttgaattattaaaaaaatatcccaaactttaaaacatcccacagagcaccattaaatccattataaaaaaattgaaagaatatggcaccaaaactcacagaccaggtaaggagggcattaatcagagaggcaacaaagagagcaaagataaccctgaaggagctgcaaagctccacagtggagattggagtatctgtttaTAGGCCCACTTTAAGccttacactccacagagctgggctttacggaagagtggccagaaaaagacattgcttaaaagaaacaaaaataatcAAACaggtttggtgttcaccaaacggcatgtgggagactccccaaacatatggaagaaggtactctggtcagatgagactaaaattgtccatcaaggaaaacactatgtctggcgcaaacccaaaacctctcatcaccccgagaacaccatgttttttttcatcagcagggactggggaaactggtcagaattgaaggaatgatggatggtgctaaatacaggaaaattcttgaggggaaacctgtttcagtcttccagagatttgagactgggacaatgaccctaagcatactgctaaagcaacatttaaatgtcttggaatggcctagtcaaagcccagacctcaatccagttgagaatctgtggtatgacttaaagattgctgtacaccagcggaacccatccaacttgaaggagctggagcagttttgccttgaagaatgggcaaaaatcccagtggctagatgtctTAAGCTcgtagagacataccccaagagacttgcagctgtaattgctgcaaaaggtggctctacaaagtactgactttggggggggggggggggggtgaatagttatgcatgctcaagttctcATTTgttggtcttatttcttgtttgtttcacaataaaaaatatttttcatcttcaaagtggtaggcatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148195 lncRNA upstream 81 28247437 ~ 28250761 (+) True ddr1
TU148171 lncRNA upstream 69841 28180682 ~ 28181001 (+) True G128474
TU148168 lncRNA upstream 79522 28170574 ~ 28171320 (+) True LOC110485682
TU148155 lncRNA upstream 109937 28140278 ~ 28140905 (+) True G128459
TU148134 lncRNA upstream 157844 28092418 ~ 28092998 (+) True G128438
TU148400 lncRNA downstream 20401 28568316 ~ 28600609 (+) True G128679
TU148373 lncRNA downstream 51372 28599287 ~ 28644026 (+) True G128652
TU148440 lncRNA downstream 85681 28633596 ~ 28634986 (+) True G128719
TU148361 lncRNA downstream 140338 28688253 ~ 28689570 (+) True G128640
TU148462 lncRNA downstream 142180 28690095 ~ 28690399 (+) True G128741
XM_036944287.1 mRNA upstream 76 28194563 ~ 28250766 (+) False ddr1
XM_036944288.1 mRNA upstream 2875 28194562 ~ 28247967 (+) False ddr1
XM_036944289.1 mRNA upstream 2875 28194562 ~ 28247967 (+) False ddr1
XM_036944293.1 mRNA upstream 2875 28194562 ~ 28247967 (+) False ddr1
XM_021556776.2 mRNA upstream 70637 28171846 ~ 28180205 (+) False LOC110485672
XM_021557037.2 mRNA downstream 35828 28583743 ~ 28687330 (+) False LOC110485836
XM_021557053.2 mRNA downstream 54740 28602655 ~ 28687330 (+) True LOC110485836
XM_036944448.1 mRNA downstream 172021 28719936 ~ 28780547 (+) False LOC110485894
XM_036944439.1 mRNA downstream 172860 28720775 ~ 28780547 (+) False LOC110485894
XM_036944441.1 mRNA downstream 173267 28721182 ~ 28780547 (+) False LOC110485894
TU148132 other upstream 161397 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 533679 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 947287 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1060249 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1090197 27148176 ~ 27160645 (+) True LOC110485212
TU148570 other downstream 384141 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 391984 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 929702 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 936718 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 1052111 29600026 ~ 29641096 (+) True G130308

Expression Profile