RNA id: TU148246


Basic Information

Item Value
RNA id TU148246
length 239
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G128531
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28264194 ~ 28265454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgggttggatgcgcgctgtgttaagaagcagtgcggcttcgttgggttgtgtttcggaggacgcatggctttcgaccttcgtctctcccgagCCAATCGATTCTCCCTAAAGATATGTTTTCATAAATCGTCGTGTACACTCAAGAGGGTTTCAATATACTCCGATTTACGTGACTTGACGACTGGCTCAAATACTGGAATTGCAACAAAATGTTACTTAACGTGACTTAATGGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148195 lncRNA upstream 13433 28247437 ~ 28250761 (+) True ddr1
TU148171 lncRNA upstream 83193 28180682 ~ 28181001 (+) True G128474
TU148168 lncRNA upstream 92874 28170574 ~ 28171320 (+) True LOC110485682
TU148155 lncRNA upstream 123289 28140278 ~ 28140905 (+) True G128459
TU148134 lncRNA upstream 171196 28092418 ~ 28092998 (+) True G128438
TU148261 lncRNA downstream 39030 28304484 ~ 28304997 (+) True G128546
TU148264 lncRNA downstream 46372 28311826 ~ 28382924 (+) True G128549
TU148276 lncRNA downstream 114328 28379782 ~ 28380102 (+) True G128561
TU148400 lncRNA downstream 302862 28568316 ~ 28600609 (+) True G128679
TU148373 lncRNA downstream 333833 28599287 ~ 28644026 (+) True G128652
XM_036944287.1 mRNA upstream 13428 28194563 ~ 28250766 (+) False ddr1
XM_036944288.1 mRNA upstream 16227 28194562 ~ 28247967 (+) False ddr1
XM_036944289.1 mRNA upstream 16227 28194562 ~ 28247967 (+) False ddr1
XM_036944293.1 mRNA upstream 16227 28194562 ~ 28247967 (+) False ddr1
XM_021556776.2 mRNA upstream 83989 28171846 ~ 28180205 (+) False LOC110485672
XM_021556890.2 mRNA downstream 4797 28270251 ~ 28280280 (+) True LOC110485735
XM_036933644.1 mRNA downstream 15658 28281112 ~ 28296740 (+) True LOC110485723
XM_036944316.1 mRNA downstream 31748 28297202 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944308.1 mRNA downstream 32017 28297471 ~ 28318817 (+) False si:dkeyp-77h1.4
XM_036944304.1 mRNA downstream 38254 28303708 ~ 28318817 (+) False si:dkeyp-77h1.4
TU148132 other upstream 174749 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 547031 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 960639 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1073601 27189991 ~ 27190593 (+) True G127644
TU147247 other upstream 1103549 27148176 ~ 27160645 (+) True LOC110485212
TU148570 other downstream 666602 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 674445 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 1212163 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 1219179 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 1334572 29600026 ~ 29641096 (+) True G130308

Expression Profile